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Issues: icbi-lab/nf-deseq2

Overall functionality
#5 opened Nov 17, 2021 by grst
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15 Open 6 Closed
15 Open 6 Closed
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Issues list

Option to run pipeline for human/mouse/etc.
#36 opened Feb 2, 2022 by vjmarteau
put publish dir logic into main config file
#33 opened Feb 1, 2022 by riederd
Add module for variancePartition
#31 opened Jan 26, 2022 by vjmarteau
2
auto-determine publish mode
#23 opened Dec 14, 2021 by riederd
2
Add module to optionally run RUVSeq and/or SVA
#18 opened Nov 18, 2021 by riederd
Add input and output documentation
#17 opened Nov 18, 2021 by grst
Add module that generates HTML report
#16 opened Nov 18, 2021 by grst
Add module for BioQC
#15 opened Nov 17, 2021 by grst
1
Add module for Progeny
#14 opened Nov 17, 2021 by grst
@chripla
Add module for Dorothea
#13 opened Nov 17, 2021 by grst
Add support for custom signatures for GSEA/ORA
#10 opened Nov 17, 2021 by grst
Add module for GSEA analysis with clusterProfiler
#9 opened Nov 17, 2021 by grst
Add module for Biotype QC
#6 opened Nov 17, 2021 by grst
@ausserh
Overall functionality
#5 opened Nov 17, 2021 by grst
Add module to check and preprocess samplesheet
#4 opened Nov 17, 2021 by grst
@ZuzanaLoncova
1
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