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Add module to check and preprocess samplesheet #4

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grst opened this issue Nov 17, 2021 · 1 comment
Open

Add module to check and preprocess samplesheet #4

grst opened this issue Nov 17, 2021 · 1 comment
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@grst
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grst commented Nov 17, 2021

At the very beginning of the pipeline, we need to verify that the samplesheet makes sense, and
sanitize it.

For instance, the samplesheet used by nf-core/rnaseq can contain multiple rows for the same sample (in case multiple fastq files need to be merged).

Input: samplesheet as provided by user
Output: cleaned samplesheet with one row per sample.

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grst commented Nov 17, 2021

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