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At the very beginning of the pipeline, we need to verify that the samplesheet makes sense, and sanitize it.
For instance, the samplesheet used by nf-core/rnaseq can contain multiple rows for the same sample (in case multiple fastq files need to be merged).
nf-core/rnaseq
Input: samplesheet as provided by user Output: cleaned samplesheet with one row per sample.
The text was updated successfully, but these errors were encountered:
Section in the old code: https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L159-L183
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ZuzanaLoncova
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At the very beginning of the pipeline, we need to verify that the samplesheet makes sense, and
sanitize it.
For instance, the samplesheet used by
nf-core/rnaseq
can contain multiple rows for the same sample (in case multiple fastq files need to be merged).Input: samplesheet as provided by user
Output: cleaned samplesheet with one row per sample.
The text was updated successfully, but these errors were encountered: