switched to system libgomp1 install

vdblab · Mar 20, 2024 · 6b24365 · 6b24365
1 parent 59e61cc
commit 6b24365
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diff --git a/build_manifest.csv b/build_manifest.csv
@@ -28,4 +28,4 @@ fastani,1.34
 dbutils,0.1.4
 sratools,3.0.10
 art,2016.06.05
-crispropendb,0.0.2
+crispropendb,0.0.3
diff --git a/crispropendb/Dockerfile b/crispropendb/Dockerfile
@@ -1,6 +1,9 @@
 FROM mambaorg/micromamba:0.25.1
 ARG VERSION="1.1.0"
-RUN micromamba install -y -n base  -c conda-forge -c bioconda -c defaults wget unzip bc libgomp
+USER root
+RUN apt-get update &&  apt-get install libgomp1 -y
+USER mambauser
+RUN micromamba install -y -n base  -c conda-forge -c bioconda -c defaults wget unzip bc
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 #RUN cd /home/mambauser/ && wget https://github.com/bhattlab/phanta/archive/refs/tags/v${VERSION}.zip && unzip v${VERSION}.zip && mv /home/mambauser/phanta-${VERSION}/ /home/mambauser/phanta/
 RUN cd /home/mambauser/ && wget https://github.com/edzuf/CrisprOpenDB/archive/ac7408aea8fc3f70e638af498a149f92b86e9d7e.zip  && unzip ac7408aea8fc3f70e638af498a149f92b86e9d7e.zip && mv /home/mambauser/CrisprOpenDB-ac7408aea8fc3f70e638af498a149f92b86e9d7e/ /home/mambauser/CrisprOpenDB/