bumpm crispropen, including libgomp

vdblab · Mar 20, 2024 · 59e61cc · 59e61cc
1 parent 5976fd7
commit 59e61cc
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diff --git a/build_manifest.csv b/build_manifest.csv
@@ -28,4 +28,4 @@ fastani,1.34
 dbutils,0.1.4
 sratools,3.0.10
 art,2016.06.05
-crispropendb,0.0.1
+crispropendb,0.0.2
diff --git a/crispropendb/Dockerfile b/crispropendb/Dockerfile
@@ -1,12 +1,12 @@
 FROM mambaorg/micromamba:0.25.1
 ARG VERSION="1.1.0"
-RUN micromamba install -y -n base  -c conda-forge -c bioconda -c defaults wget unzip bc
+RUN micromamba install -y -n base  -c conda-forge -c bioconda -c defaults wget unzip bc libgomp
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 #RUN cd /home/mambauser/ && wget https://github.com/bhattlab/phanta/archive/refs/tags/v${VERSION}.zip && unzip v${VERSION}.zip && mv /home/mambauser/phanta-${VERSION}/ /home/mambauser/phanta/
 RUN cd /home/mambauser/ && wget https://github.com/edzuf/CrisprOpenDB/archive/ac7408aea8fc3f70e638af498a149f92b86e9d7e.zip  && unzip ac7408aea8fc3f70e638af498a149f92b86e9d7e.zip && mv /home/mambauser/CrisprOpenDB-ac7408aea8fc3f70e638af498a149f92b86e9d7e/ /home/mambauser/CrisprOpenDB/
 WORKDIR /home/mambauser/CrisprOpenDB/
 RUN micromamba install -y -n base  -c conda-forge -c bioconda -c defaults --file conda_env.txt  && \
-    micromamba install -c conda-forge -c bioconda -c defaults blast && \
+    micromamba install -y -c conda-forge -c bioconda -c defaults blast && \
     micromamba clean --all --yes
 RUN python setup.py install
 ARG MAMBA_DOCKERFILE_ACTIVATE=1