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BUG: x-axis data missing in alpha rarefaction viz #360

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merged 3 commits into from
Jun 20, 2024
Merged

BUG: x-axis data missing in alpha rarefaction viz #360

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8fe25a1
BUG: x-axis data missing in alpha rarefaction viz
lizgehret Jun 11, 2024
60b0d95
remove debug comments & re-run ci
lizgehret Jun 12, 2024
f17a3f1
better solution
lizgehret Jun 20, 2024
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4 changes: 2 additions & 2 deletions q2_diversity/_alpha/_visualizer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -377,9 +377,9 @@ def alpha_rarefaction(output_dir: str, table: biom.Table, max_depth: int,
raise ValueError("All metadata filtered after dropping columns "
"that contained non-categorical data.")
metadata_df.columns = pd.MultiIndex.from_tuples(
[(c, '') for c in metadata_df.columns])
[(c, '') for c in metadata_df.columns],
names=('_alpha_rarefaction_depth_column_', 'iter'))
columns = metadata_df.columns.get_level_values(0)

data = _compute_rarefaction_data(table, min_depth, max_depth,
steps, iterations, phylogeny, metrics)

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