Repositories list

• VesselExpress

  Public
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

  bioinformaticssnakemakehigh-throughput+ 6graph-analysisvessel-segmentation3d-imaging3d-skeletonlight-sheet-microscopydocker

  Python

  •

  GNU General Public License v3.0

  •5•40•5•0•Updated Jun 6, 2024Jun 6, 2024

• omnisphero-mil

  Public
  Multiple instance learning for tiled OmniSphero wells.

  TeX

  •0•1•0•0•Updated Dec 7, 2023Dec 7, 2023

• DimensionalityReduction

  Public
  Open source python packages to perform dimensionality reduction with spectroscopic datasets

  Python

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Feb 3, 2023Feb 3, 2023

• CellomicsArrayScanPuzzleHelper

  Public
  Java

  •0•2•0•0•Updated Feb 1, 2023Feb 1, 2023

• OmniNeuroDatabaseClient

  Public
  Gradle based Java Client

  Java

  •0•1•0•0•Updated Sep 13, 2022Sep 13, 2022

• omnisphero-cnn

  Public
  Training and prediction scripts of CNN models for neuron and oligo detection

  Python

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Sep 13, 2022Sep 13, 2022

• OpenVibSpec

  Public
  Open source python packages for the work in vibrational spectroscopy

  Python

  •

  BSD 2-Clause "Simplified" License

  •8•9•0•0•Updated Feb 23, 2022Feb 23, 2022

• HT-PropagatedNeuriteSkeletonization

  Public
  High Throughput Durix Skeletonization for neurite outgrowth of in vitro neuron cell culture

  C++

  •

  MIT License

  •0•4•0•0•Updated Jul 23, 2021Jul 23, 2021