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@RUB-Bioinf

RUB Bioinformatics Group

Bioinformatics focused Deep Learning, Image Analysis and Skeletonization.

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  1. VesselExpress VesselExpress Public

    🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

    Python 40 5

  2. OpenVibSpec OpenVibSpec Public

    Open source python packages for the work in vibrational spectroscopy

    Python 9 8

  3. HT-PropagatedNeuriteSkeletonization HT-PropagatedNeuriteSkeletonization Public

    High Throughput Durix Skeletonization for neurite outgrowth of in vitro neuron cell culture

    C++ 4

  4. omnisphero-cnn omnisphero-cnn Public

    Training and prediction scripts of CNN models for neuron and oligo detection

    Python 3

  5. DimensionalityReduction DimensionalityReduction Public

    Open source python packages to perform dimensionality reduction with spectroscopic datasets

    Python 3

  6. CellomicsArrayScanPuzzleHelper CellomicsArrayScanPuzzleHelper Public

    Java 2

Repositories

Showing 8 of 8 repositories
  • VesselExpress Public

    🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

    RUB-Bioinf/VesselExpress’s past year of commit activity
    Python 40 GPL-3.0 5 5 0 Updated Jun 6, 2024
  • omnisphero-mil Public

    Multiple instance learning for tiled OmniSphero wells.

    RUB-Bioinf/omnisphero-mil’s past year of commit activity
    TeX 1 0 0 0 Updated Dec 7, 2023
  • DimensionalityReduction Public

    Open source python packages to perform dimensionality reduction with spectroscopic datasets

    RUB-Bioinf/DimensionalityReduction’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Feb 3, 2023
  • RUB-Bioinf/CellomicsArrayScanPuzzleHelper’s past year of commit activity
    Java 2 0 0 0 Updated Feb 1, 2023
  • OmniNeuroDatabaseClient Public

    Gradle based Java Client

    RUB-Bioinf/OmniNeuroDatabaseClient’s past year of commit activity
    Java 1 0 0 0 Updated Sep 13, 2022
  • omnisphero-cnn Public

    Training and prediction scripts of CNN models for neuron and oligo detection

    RUB-Bioinf/omnisphero-cnn’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Sep 13, 2022
  • OpenVibSpec Public

    Open source python packages for the work in vibrational spectroscopy

    RUB-Bioinf/OpenVibSpec’s past year of commit activity
    Python 9 BSD-2-Clause 8 0 0 Updated Feb 23, 2022
  • HT-PropagatedNeuriteSkeletonization Public

    High Throughput Durix Skeletonization for neurite outgrowth of in vitro neuron cell culture

    RUB-Bioinf/HT-PropagatedNeuriteSkeletonization’s past year of commit activity
    C++ 4 MIT 0 0 0 Updated Jul 23, 2021

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