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34 Open 43 Closed
34 Open 43 Closed
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Issues list

Use another genome/annotation?
#123 opened Aug 12, 2021 by dining-philosopher
Can I specify which ensembl release to use by the isovar command line?
#122 opened Jan 20, 2021 by nknewnew
RNA sequencing coverage
#120 opened May 20, 2020 by nknewnew
get more than the top protein sequence
#118 opened Nov 8, 2019 by drna
1
Weird chromosome bug in MT variant under GRCh38
#116 opened Aug 2, 2019 by iskandr
Normalize counts by number of mapped reads to get CPM
#112 opened Jun 18, 2019 by iskandr
Constructing wildtype peptides
#100 opened Jul 12, 2018 by felixfrenkel
3
Variant sequence ... shorter than min allowed
#99 opened Jun 3, 2018 by gilhornung
ASE for Synonymous + Non-synonymous Variants
#93 opened Mar 9, 2018 by JPFinnigan
3
No exon_id in mouse mm9 ensembl annotaiotn
#92 opened Mar 9, 2018 by weizhu365
Isovar on multiple .bam
#91 opened Jan 21, 2018 by JPFinnigan
1
Unexpectedly short protein sequences
#90 opened Nov 27, 2017 by iskandr
9
Too slow running isovar. Could it be run in multithread?
#89 opened Nov 7, 2017 by Jemimacat
Questions about Isovar
#88 opened Oct 31, 2017 by iskandr
@julia326
User wants "hg19" as genome option
#87 opened Oct 31, 2017 by iskandr
Figure out what to do when variant and transcript don't match
#84 opened May 24, 2017 by julia326
Variant effect has a null aa_mutation_start_offset
#81 opened Apr 14, 2017 by julia326
@julia326
1
Left align indels
#79 opened Jan 24, 2017 by iskandr
Make phasing of multiple variants on a read explicit (group reads into phase groups) bug enhancement
#72 opened Dec 13, 2016 by ihodes
4
Verify that we de-duplicate identical reads question
#69 opened Nov 24, 2016 by ihodes
Elongate coding sequences using reference transcripts enhancement
#66 opened Nov 18, 2016 by iskandr
Travis caching still not working bug
#63 opened Nov 17, 2016 by iskandr
1
Merge overlapping read pairs into single LocusRead
#59 opened Nov 4, 2016 by iskandr
1
Isovar undercounting supporting reference reads bug
#55 opened Oct 24, 2016 by ihodes
@iskandr
6
CLI switch for changing logging levels (not just writing to a file) enhancement
#50 opened Oct 19, 2016 by ihodes
@julia326
1
ProTip! no:milestone will show everything without a milestone.