-
Notifications
You must be signed in to change notification settings - Fork 168
Issues: nf-core/scrnaseq
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
MTX_CONVERSION:MTX_TO_SEURAT fails with certain feature names
bug
Something isn't working
#385
opened Oct 24, 2024 by
ChristopherBarrington
cellranger-multi => create-bam option
enhancement
New feature or request
#384
opened Oct 21, 2024 by
nick-youngblut
cellranger multi => MTX_TO_H5AD: input file name collision
bug
Something isn't working
#383
opened Oct 17, 2024 by
nick-youngblut
Crashes due to trying to unzip file that is not zipped
bug
Something isn't working
#380
opened Oct 11, 2024 by
esrice
CellRanger Multi => add combined h5ad files in New feature or request
mtx_conversions
enhancement
#378
opened Oct 8, 2024 by
nick-youngblut
CellRanger Multi => add to MultiQC report
enhancement
New feature or request
#377
opened Oct 8, 2024 by
nick-youngblut
cellranger multi => pipeline creates STAR index that does not match probeset
bug
Something isn't working
#375
opened Oct 7, 2024 by
nick-youngblut
cellrangerarc test failing - null path?
bug
Something isn't working
#374
opened Oct 4, 2024 by
davhum
cellranger-multi => incorrect feature_type assigned to samples
bug
Something isn't working
#373
opened Oct 3, 2024 by
nick-youngblut
Allow pre-built cellranger index, CellrangerARC index, simpleaf Index, and simpleaf tx2pgene load from igenomes.json
enhancement
New feature or request
#371
opened Sep 20, 2024 by
wzheng0520
MTX_TO_H5AD module cannot take ch_star_index
bug
Something isn't working
#370
opened Sep 20, 2024 by
wzheng0520
results from awsmegatests missing on homepage
bug
Something isn't working
#367
opened Sep 2, 2024 by
asp8200
test_full-profile not running out-of-the-box
bug
Something isn't working
#366
opened Sep 2, 2024 by
asp8200
Standardize h5ad/seurat var gene annotations across aligners
enhancement
New feature or request
#363
opened Aug 15, 2024 by
alexblaessle
nextflow inspect does not work due to missing parameters
bug
Something isn't working
#347
opened Jul 26, 2024 by
stevekm
cellranger count => Your reference does not contain the expected files
bug
Something isn't working
#345
opened Jul 11, 2024 by
nick-youngblut
Implement sample demultiplexing followed by VDJ + feature barcode analysis per sample
enhancement
New feature or request
#343
opened Jun 28, 2024 by
herpov
cellranger_count.py: capture stderr and stdout
enhancement
New feature or request
quality & consistency
improve quality and reduce maintenance burden
#341
opened Jun 24, 2024 by
nick-youngblut
Trimming R1 fast files in all aligners
enhancement
New feature or request
#333
opened May 24, 2024 by
ChristopherMancuso
cellranger-multi implementation follow-up
enhancement
New feature or request
#332
opened May 23, 2024 by
fmalmeida
5 tasks
Running 'cellranger-arc count' with existing genome index
enhancement
New feature or request
#331
opened May 17, 2024 by
ashwinikumarkulkarni
Sample merging does not work if files are named the same
bug
Something isn't working
bug-confirmed
#324
opened May 4, 2024 by
nick-youngblut
Previous Next
ProTip!
no:milestone will show everything without a milestone.