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cellranger-multi => create-bam option #384

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nick-youngblut opened this issue Oct 21, 2024 · 0 comments
Open

cellranger-multi => create-bam option #384

nick-youngblut opened this issue Oct 21, 2024 · 0 comments
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enhancement New feature or request

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@nick-youngblut
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Description of feature

As stated in the 10X docs:

Important: In the examples below, we set create-bam to "false" so Cell Ranger will not generate a BAM file. This setting is recommended for Fixed RNA Profiling libraries and will reduce both the total computation time for the pipestance and the size of the output directory.

It appears that there is currently no way of setting create-bam to true/false via the scrnaseq pipeline params.
@nick-youngblut nick-youngblut added the enhancement New feature or request label Oct 21, 2024
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