Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[For TEST and PROD] Welling/soft assay types start #398

Merged
merged 56 commits into from
Dec 18, 2023
Merged

[For TEST and PROD] Welling/soft assay types start #398

merged 56 commits into from
Dec 18, 2023

Conversation

yuanzhou
Copy link
Member

@yuanzhou yuanzhou commented Oct 18, 2023 •
edited
Loading

Following merged PR #380 #407 #435 #438 #441 #443 #445 for TEST.

Already released the 3 new endpoints added in gateway

Add new config to PSC GitLab for PROD deployment:

# URI from which to load the assay classifier rules.
RULE_CHAIN_URI = 'https://raw.githubusercontent.com/hubmapconsortium/ingest-api/main/src/routes/assayclassifier/testing_rule_chain.json'

jswelling and others added 19 commits September 12, 2023 23:37
github-advanced-security[bot]
github-advanced-security bot found potential problems Nov 1, 2023
View reviewed changes
src/routes/assayclassifier/__init__.py Dismissed Show dismissed Hide dismissed
@gesinaphillips gesinaphillips force-pushed the welling/soft_assay_types_start branch 2 times, most recently from eaeba4b to e4cdb98 Compare December 6, 2023 15:48
gesinaphillips and others added 25 commits December 7, 2023 15:52
@gesinaphillips
added bulk ATACseq and RNAseq, updated field name rna_probe_panel to …
5001023 
…oligo_probe_panel
@jswelling
Added ATACseq rules. Restructured Bulk.
8a0b979
@jswelling
Add multiome; other bugfixes
9ccbf7b
@jswelling
Fix some rule descriptions
7d49198
General: Update to point to latest IVT commit
2fa3b06
General: Update to include contains-pii and primary in value sets.
aa4c971
General: Update to include contains-pii and primary in value sets.
97cf9b3
General: Update to include contains-pii and primary in value sets.
ccb0bd4
General: Update must_contain to must-contain
ab66e13
General: Point IVT to the latest commit
6a81885
General: Set contains-pii to true for Visium
8658c8f
General: Fix broken dir-schemas
15c70ba
General: Point to latest main
c0b51f6
@jswelling
Patch around data_type array
0aa31e8
@jswelling
Further patch data_types array
4b24ac0
@jswelling
Further patch data_types array
3247f31
@jswelling
Add 'is_support' to vis-lifted dataset vitessce_hints
0aebb8a
@jswelling
seqFISH_pyramid is not a primary dataset
cc5e41e
@jswelling
regenerated with recent changes
9320f82
@jswelling
Add uuid for an unpublished dataset to tests
a7a6c6e
@jswelling
Try to access entity-api with no token if token fails
a7c89b8
@gesinaphillips
changes to 10x multiome and snareseq to remove barcode and umi values…
094d524 
…, change to 2 of 3 atacseq single nucleus rules to make umi values not applicable
General: Check for auth header and set groups_toekn to blank if no au…
a488f43 
…th header
@gesinaphillips
Merge branch 'main' of github.com:hubmapconsortium/ingest-api into we…
deae5c6 
…lling/soft_assay_types_start
@gesinaphillips
change empty string to None
edc4916
@yuanzhou yuanzhou marked this pull request as ready for review December 18, 2023 19:47
@yuanzhou yuanzhou merged commit a78c452 into main Dec 18, 2023
4 checks passed
@yuanzhou yuanzhou deleted the welling/soft_assay_types_start branch December 19, 2023 00:14
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@yuanzhou @jswelling @gesinaphillips