fix to rnaseq (with probes), cleanup rule_description

hubmapconsortium · Dec 5, 2023 · e4cdb98 · e4cdb98
1 parent d0068b6
commit e4cdb98
Showing 1 changed file with 10 additions and 10 deletions.
diff --git a/src/routes/assayclassifier/testing_rule_chain.json b/src/routes/assayclassifier/testing_rule_chain.json
@@ -489,49 +489,49 @@
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'single cell' and barcode_read =~~ 'Not applicable' and barcode_size == 40 and barcode_offset == 'Not applicable' and umi_read =~~ 'Not applicable' and umi_size == 8 and umi_offset == 'Not applicable'",
         "value": "{'assaytype': 'sciRNAseq', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'sciRNA-seq'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG sciRNAseq"
     },
     {
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'single nucleus' and barcode_read =~~ 'Read 1' and barcode_size == 24 and barcode_offset == '10,48,86' and umi_read =~~ 'Read 1' and umi_size == 10 and umi_offset == 0",
         "value": "{'assaytype': 'SNARE-RNAseq2', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'snRNAseq (SNARE-seq2)'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG SNARE-RNAseq2"
     },
     {
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'spot' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 12 and umi_offset == 16",
         "value": "{'assaytype': 'scRNAseq-10Genomics-v3', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'scRNA-seq (10x Genomics v3)'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG scRNAseq-10Genomics-v3"
     },
     {
         "type": "match",
-        "match": "is_dcwg and dataset_type == 'RNAseq (with probes)' and RNA_probe_panel == '10x Genomics; Visium Human Transcriptome Probe Kit v2 - Small; PN 1000466' and assay_input_entity == 'spot' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 12 and umi_offset == 16",
+        "match": "is_dcwg and dataset_type == 'RNAseq (with probes)' and oligo_probe_panel == '10x Genomics; Visium Human Transcriptome Probe Kit v2 - Small; PN 1000466' and assay_input_entity == 'spot' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 12 and umi_offset == 16",
         "value": "{'assaytype': 'scRNAseq-visium-with-probes', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'Visium RNAseq with probes'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG scRNAseq-visium-with-probes"
     },
     {
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'single cell' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 10 and umi_offset == 16",
         "value": "{'assaytype': 'scRNAseq-10xGenomics-v2', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'scRNA-seq (10x Genomics v2)'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG scRNAseq-10xGenomics-v2"
     },
     {
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'single nucleus' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 10 and umi_offset == 16",
         "value": "{'assaytype': 'snRNAseq-10xGenomics-v2', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'snRNA-seq (10x Genomics v2)'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG snRNAseq-10xGenomics-v2"
     },
     {
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'single cell' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 12 and umi_offset == 16",
         "value": "{'assaytype': 'scRNAseq-10xGenomics-v3', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'scRNA-seq (10x Genomics v3)'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG scRNAseq-10xGenomics-v3"
     },
     {
         "type": "match",
         "match": "is_dcwg and dataset_type == 'RNAseq'  and assay_input_entity == 'single nucleus' and barcode_read =~~ 'Read 1' and barcode_size == 16 and barcode_offset == 0 and umi_read =~~ 'Read 1' and umi_size == 12 and umi_offset == 16",
         "value": "{'assaytype': 'snRNAseq-10xGenomics-v3', 'vitessce_hints': [], 'dir_schema': 'scrnaseq-v2', 'description': 'snRNA-seq (10x Genomics v3)'}",
-        "rule_description": "DCWG {assay}"
+        "rule_description": "DCWG snRNAseq-10xGenomics-v3"
     },
     {
         "type": "match",
@@ -671,4 +671,4 @@
         "value": "{'assaytype': 'molecular-cartography', 'vitessce_hints': [], 'dir_schema': 'mc-v2', 'description': 'Molecular Cartography'}",
         "rule_description": "DCWG molecular-cartography"
     }
-]
+]