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remove parent from 24ABC, update bad seqs #18

remove parent from 24ABC, update bad seqs

remove parent from 24ABC, update bad seqs #18

Workflow file for this run

# Build web app and deploy it
name: web
on:
push:
branches: [ "master", "release" ]
repository_dispatch:
types: web
workflow_dispatch:
workflow_call:
concurrency:
group: web-${{ github.workflow }}-${{ github.ref_type }}-${{ github.event.pull_request.number || github.ref || github.run_id }}
cancel-in-progress: true
defaults:
run:
shell: bash -euxo pipefail {0}
env:
GITHUB_REPOSITORY_URL: ${{ github.server_url }}/${{ github.repository }}
AWS_MAX_ATTEMPTS: 10
PROD_ENABLE_TYPE_CHECKS: 0
VERBOSE: 1
jobs:
build-web:
name: "build-web"
runs-on: ubuntu-22.04
environment:
name: ${{ github.ref }}
steps:
- name: "[init] Check disk space"
run: |
echo ""
df -Th | awk 'NR == 1; NR > 1 {print $0 | "sort -n"}'
echo ""
lsblk -o MOUNTPOINT,FSTYPE,FSSIZE,FSAVAIL,FSUSE%,TYPE,NAME,ROTA,SIZE,MODEL,UUID
- name: "[init] Checkout code"
uses: actions/checkout@v4
with:
fetch-depth: 1
submodules: true
- name: "[build] Setup environment (release)"
if: endsWith(github.ref, '/release')
run: |
echo "ENV_NAME=release" >> $GITHUB_ENV
echo "FULL_DOMAIN=https://covariants.org" >> $GITHUB_ENV
echo "PLAUSIBLE_IO_DOMAIN=covariants.org" >> $GITHUB_ENV
- name: "[build] Setup environment (master)"
if: endsWith(github.ref, '/master')
run: |
echo "ENV_NAME=master" >> $GITHUB_ENV
echo "FULL_DOMAIN=https://covariants.org" >> $GITHUB_ENV
echo "PLAUSIBLE_IO_DOMAIN=master.covariants.org" >> $GITHUB_ENV
- name: "[build] Setup Node.js"
uses: actions/setup-node@v4
with:
node-version-file: ".nvmrc"
cache: "yarn"
cache-dependency-path: "web/yarn.lock"
- name: "[build] Setup cache for web app"
uses: actions/cache@v4
with:
path: |
web/.cache
web/.build/production/tmp/cache
key: cache-v1-web-${{ runner.os }}-${{ hashFiles('**/yarn.lock') }}
restore-keys: |
cache-v1-web-${{ runner.os }}-${{ hashFiles('**/yarn.lock') }}
cache-v1-web-${{ runner.os }}-
- name: "[build] Prepare .env file"
run: |
cd web/
cp .env.example .env
sed -i -e "s|FULL_DOMAIN=autodetect|FULL_DOMAIN=${FULL_DOMAIN}|g" .env
- name: "[build] Install Node.js packages"
run: |
cd web
yarn install --frozen-lockfile
- name: "[build] Build web application"
run: |
cd web
yarn lint:ci
yarn prod:build:ci
- name: "[deployment] Setup environment (release)"
if: endsWith(github.ref, '/release')
run: |
echo "AWS_ACCESS_KEY_ID=${{ secrets.AWS_ACCESS_KEY_ID }}" >> $GITHUB_ENV
echo "AWS_SECRET_ACCESS_KEY=${{ secrets.AWS_SECRET_ACCESS_KEY }}" >> $GITHUB_ENV
echo "AWS_CLOUDFRONT_DISTRIBUTION_ID=${{ secrets.AWS_CLOUDFRONT_DISTRIBUTION_ID }}" >> $GITHUB_ENV
echo "AWS_DEFAULT_REGION=${{ secrets.AWS_DEFAULT_REGION }}" >> $GITHUB_ENV
echo "AWS_S3_BUCKET=${{ secrets.AWS_S3_BUCKET }}" >> $GITHUB_ENV
- name: "[deployment] Setup environment (master)"
if: endsWith(github.ref, '/master')
run: |
echo "AWS_ACCESS_KEY_ID=${{ secrets.AWS_ACCESS_KEY_ID }}" >> $GITHUB_ENV
echo "AWS_SECRET_ACCESS_KEY=${{ secrets.AWS_SECRET_ACCESS_KEY }}" >> $GITHUB_ENV
echo "AWS_CLOUDFRONT_DISTRIBUTION_ID=${{ secrets.AWS_CLOUDFRONT_DISTRIBUTION_ID }}" >> $GITHUB_ENV
echo "AWS_DEFAULT_REGION=${{ secrets.AWS_DEFAULT_REGION }}" >> $GITHUB_ENV
echo "AWS_S3_BUCKET=${{ secrets.AWS_S3_BUCKET }}" >> $GITHUB_ENV
- name: "[deployment] Install dependencies"
run: |
pushd /tmp >/dev/null
curl -fsSL "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip"
unzip -oqq awscliv2.zip
sudo ./aws/install --update
popd >/dev/null
aws --version
- name: "[deployment] Clear AWS S3 bucket: html files, web root, app bundle"
run: |
aws s3 rm s3://${AWS_S3_BUCKET} --recursive --exclude "proteins/*" --exclude "acknowledgements/*"
- name: "[deployment] Copy to AWS S3: app bundle"
run: |
cd web/.build/production/web
aws s3 cp --recursive --cache-control "max-age=2592000, public" "_next/" "s3://${AWS_S3_BUCKET}/_next/"
- name: "[deployment] Copy to AWS S3: web root"
run: |
cd web/.build/production/web
aws s3 cp --recursive \
--exclude "_next/*" \
--exclude "*.html" \
--exclude "acknowledgements/*" \
--exclude "proteins/*" \
"./" "s3://${AWS_S3_BUCKET}/"
- name: "[deployment] Copy to AWS S3: html files"
run: |
cd web/.build/production/web
find * -type f -name "*.html" -print0 | xargs -0 -P4 -n1 -I '{}' -- bash -c '\
file={}; \
aws s3 cp \
--content-type "text/html" \
--cache-control "no-cache" \
--metadata-directive REPLACE \
$file \
s3://${AWS_S3_BUCKET}/${file%.html}'
- name: "[deployment] Invalidate AWS Cloudfront cache: html files, web root, app bundle"
run: |
aws cloudfront create-invalidation \
--distribution-id ${AWS_CLOUDFRONT_DISTRIBUTION_ID} \
--paths "/*"
- name: "[deployment] Clear AWS S3 bucket: large static files"
run: |
aws s3 rm s3://${AWS_S3_BUCKET} --recursive --exclude "*" --include "proteins/" --include "acknowledgements/"
- name: "[deployment] Copy to AWS S3: large static files "
run: |
cd web/.build/production/web
aws s3 cp --recursive --cache-control "max-age=7200, public" --metadata-directive REPLACE "proteins/" "s3://${AWS_S3_BUCKET}/proteins/"
aws s3 cp --recursive --cache-control "max-age=7200, public" --metadata-directive REPLACE "acknowledgements/" "s3://${AWS_S3_BUCKET}/acknowledgements/"
- name: "[deployment] Invalidate AWS Cloudfront cache: large static files"
run: |
aws cloudfront create-invalidation \
--distribution-id ${AWS_CLOUDFRONT_DISTRIBUTION_ID} \
--paths "/acknowledgements/*" "/proteins/*"