remove parent from 24ABC, update bad seqs

scripts/bad_sequences.py

@@ -5363,7 +5363,37 @@
     "Nepal/NPHL-S-927/2020" : "2020-08-04",  #21.Delta EPI_ISL_19214821
     "Nepal/NPHL-S-929/2020" : "2020-08-09",  #21.Delta EPI_ISL_19214823
     "Nepal/NPHL-S-932/2020" : "2020-08-26",  #21.Delta EPI_ISL_19214826
-
+    #24 aug 2024
+    "Algeria/2672/2023" : "2023-02-06", # EPI_ISL_19302802 #24A
+    "Italy/LOM_ASSTCREMONA_7111497/2023" : "2023-07-14", # EPI_ISL_19297877 #24A
+    "Mexico/CMX-INMEGEN-123-101/2023" : "2023-02-16", # EPI_ISL_19267281 #24A
+    "Mexico/CMX-INMEGEN-123-105/2023" : "2023-02-19", # EPI_ISL_19267285 #24A
+    "Mexico/CMX-INMEGEN-123-97/2023" : "2023-02-14", # EPI_ISL_19267277 #24A
+    "Mexico/CMX-INMEGEN-123-98/2023" : "2023-02-15", # EPI_ISL_19267278 #24A
+    "Mexico/CMX-INMEGEN-123-99/2023" : "2023-02-15", # EPI_ISL_19267279 #24A
+    "USA/CA-SMCPHL-409/2023" : "2023-08-27", # EPI_ISL_19266950 #24A
+    "Brazil/MG-FUNED-205/2020" : "2020-03-17", # EPI_ISL_19298588 #Gamma
+    "Italy/LOM_ASSTCREMONA_7111494/2023" : "2023-07-05", # EPI_ISL_19297876 #24B 
+    "SouthAfrica/WITS-DIH-043E-D/2020" : "2020-07-01", # EPI_ISL_19336556 #21K 
+    "SouthAfrica/WITS-DIH-073E-D/2020" : "2020-06-01", # EPI_ISL_19336593 #21K 
+    "SouthAfrica/WITS-DIH-106E-D/2021" : "2021-02-01", # EPI_ISL_19336624 #21K 
+    "SouthAfrica/WITS-DIH-075E-D/2020" : "2020-06-01", # EPI_ISL_19336595 #Beta
+    "SouthAfrica/WITS-DIH-087E-D/2020" : "2020-08-01", # EPI_ISL_19336607 #Beta
+    "Spain/AR-IACS_LaSARD-00632960/2021" : "2021-07-16", # EPI_ISL_19237269 #21L
+    "Canada/SK-RRPL-720213/2024" : "2024-01-25", # EPI_ISL_19284178 #24C
+    "France/CVF-IPP07731/2024" : "2024-01-07", # EPI_ISL_19267217 #24C
+    "France/CVF-IPP07732/2024" : "2024-01-07", # EPI_ISL_19267218 #24C
+    "India/AS-DIB-65/2024" : "2024-01-11", # EPI_ISL_19266250 #24C
+    "Italy/LOM_ASSTCREMONA_7111494/2023" : "2023-07-05", # EPI_ISL_19297876 #24C
+    "Spain/MC-HCUVA-44033745/2024" : "2024-01-11", # EPI_ISL_19296731 #24C
+    "Thailand/MTM_01_1350/2024" : "2024-01-12", # EPI_ISL_19315376 #24C
+    "Thailand/MTM_01_1355/2024" : "2024-01-20", # EPI_ISL_19315380 #24C
+    "USA/NJ-GBW-H10-020-3873/2024" : "2024-01-22", # EPI_ISL_19328553 #24C
+    "USA/NJ-GBW-H20-348-2996/2024" : "2024-01-25", # EPI_ISL_19288404 #24C
+    "USA/NY-GBW-H20-355-3184/2024" : "2024-01-26", # EPI_ISL_19288569 #24C
+    "USA/VA-GBW-H10-019-0790/2024" : "2024-01-24", # EPI_ISL_19328585 #24C
+    "USA/VA-GBW-H20-340-0488/2024" : "2024-01-21", # EPI_ISL_19288804 #24C
+    "USA/VA-GBW-H20-352-9159/2024" : "2024-01-24", # EPI_ISL_19288600 #24C
 
     #bad haiti recent uploads that seem to have some dating issues
     "Haiti/IMIS-0918368/2022" : "2022-07-01",  #? EPI_ISL_18060054

scripts/clusters.py

@@ -3069,8 +3069,8 @@
        "snps_with_base": ["T3565C","C18894T","T22926C","T27810C"], #MUST ADD VALUE WHEN TURN INTO PAGE!  
        "cluster_data": [],
        "nextstrain_build": True,
-       "parent": "23I", 
-       "use_pango": True,
+       #"parent": "23I", 
+       "use_pango": False,
        "has_no_page": False,
        "type": "variant",
        "graphing": True,
@@ -3256,8 +3256,8 @@
        "snps_with_base": ["7113T","17334T","22928C","24872T","27810C"], #MUST ADD VALUE WHEN TURN INTO PAGE!  
        "cluster_data": [],
        "nextstrain_build": True,
-       "parent": "24A", 
-       "use_pango": True,
+       #"parent": "24A", 
+       "use_pango": False,
        "has_no_page": False,
        "type": "variant",
        "graphing": True,
@@ -3447,8 +3447,8 @@
        "snps_with_base": ["7113T","17334T","22928C","24872T","27810C"], #MUST ADD VALUE WHEN TURN INTO PAGE!  
        "cluster_data": [],
        "nextstrain_build": True,
-       "parent": "24B", 
-       "use_pango": True,
+       #"parent": "24B", 
+       "use_pango": False,
        "has_no_page": False,
        "type": "variant",
        "graphing": True,