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more white space, but why did the previous buidl fail?
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gavryushkin authored Sep 17, 2024
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Expand Up @@ -28,13 +28,13 @@ title: Publications
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2022.05.03.490538)

- **Automated convergence diagnostic for phylogenetic MCMC analyses**<br>
Lars Berling, Remco Bouckaert, and Alex Gavryushkin<br>
*IEEE/ACM Transactions on Computational Biology and Bioinformatics* 2024<br>
Lars Berling, Remco Bouckaert, and Alex Gavryushkin<br>
*IEEE/ACM Transactions on Computational Biology and Bioinformatics* 2024<br>
[<i class="ai ai-open-access-square ai-3x"></i>](https://doi.org/10.1109/TCBB.2024.3457875)
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2023.08.10.552869)

- **Estimating the mean in the space of ranked phylogenetic trees**<br>
Lars Berling, Lena Collienne, and Alex Gavryushkin<br>
Lars Berling, Lena Collienne, and Alex Gavryushkin<br>
*Bioinformatics* 2024<br>
[<i class="ai ai-open-access-square ai-3x"></i>](https://doi.org/10.1093/bioinformatics/btae514)
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2023.05.08.539790)
Expand All @@ -58,13 +58,13 @@ title: Publications
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2021.12.13.471844)

- **SNVformer: an attention-based deep neural network for GWAS data**<br>
Kieran Elmes, Diana Benavides-Prado, Neset Ozkan Tan, Trung Bao Nguyen, Nicholas Sumpter, Megan Leask, Michael Witbrock, and Alex Gavryushkin<br>
Kieran Elmes, Diana Benavides-Prado, Neset Ozkan Tan, Trung Bao Nguyen, Nicholas Sumpter, Megan Leask, Michael Witbrock, and Alex Gavryushkin<br>
*ICML Workshop on Computational Biology* 2022<br>
[<i class="ai ai-open-access-square ai-3x"></i>](https://icml-compbio.github.io/2022/papers/WCBICML2022_paper_58.pdf)
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2022.07.07.499217)

- **Accounting for errors in data improves timing in single-cell cancer evolution**<br>
Kylie Chen, Jiří Moravec, Alex Gavryushkin, David Welch, and Alexei Drummond<br>
Kylie Chen, Jiří Moravec, Alex Gavryushkin, David Welch, and Alexei Drummond<br>
*Molecular Biology and Evolution* 2022<br>
[<i class="ai ai-open-access-square ai-3x"></i>](https://doi.org/10.1093/molbev/msac143)
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2021.03.17.435906)
Expand All @@ -75,7 +75,7 @@ title: Publications
[<i class="ai ai-open-access-square ai-3x"></i>](https://www.ncbi.nlm.nih.gov/pmc/articles/pmc9059781/)

- **Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software**<br>
Paul Gardner, James Paterson, Stephanie McGimpsey, Fatemeh Ashari-Ghomi, Sinan Umu, Aleksandra Pawlik, Alex Gavryushkin, and Michael Black<br>
Paul Gardner, James Paterson, Stephanie McGimpsey, Fatemeh Ashari-Ghomi, Sinan Umu, Aleksandra Pawlik, Alex Gavryushkin, and Michael Black<br>
*Genome Biology* 2022<br>
[<i class="ai ai-open-access-square ai-3x"></i>](https://doi.org/10.1186/s13059-022-02625-x)
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/092205)
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