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reoder papers + spacing typos
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gavryushkin authored Sep 16, 2024
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- **Filtering for highly variable genes and high quality spots improves phylogenetic analysis of cancer spatial transcriptomics Visium data**<br>
Sasha Gavryushkina, Holly Pinkney, Sarah Diermeier, and Alex Gavryushkin<br>
Sasha Gavryushkina, Holly Pinkney, Sarah Diermeier, and Alex Gavryushkin<br>
*bioRxiv* 2024<br>
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2024.07.11.603166)

Expand All @@ -18,21 +18,21 @@ title: Publications
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2024.02.08.579547)

- **Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilities**<br>
Lars Berling, Jonathan Klawitter, Remco Bouckaert, Dong Xie, Alex Gavryushkin, and Alexei Drummond<br>
Lars Berling, Jonathan Klawitter, Remco Bouckaert, Dong Xie, Alex Gavryushkin, and Alexei Drummond<br>
*bioRxiv* 2024<br>
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2024.02.20.581316)

- **Online Bayesian analysis with BEAST 2**<br>
Remco Bouckaert, Lena Collienne, and Alex Gavryushkin<br>
*bioRxiv* 2022<br>
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2022.05.03.490538)

- **Automated convergence diagnostic for phylogenetic MCMC analyses**<br>
Lars Berling, Remco Bouckaert, and Alex Gavryushkin<br>
*IEEE/ACM Transactions on Computational Biology and Bioinformatics* 2024<br>
[<i class="ai ai-open-access-square ai-3x"></i>](https://doi.org/10.1109/TCBB.2024.3457875)
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2023.08.10.552869)

- **Online Bayesian analysis with BEAST 2**<br>
Remco Bouckaert, Lena Collienne, and Alex Gavryushkin<br>
*bioRxiv* 2022<br>
[<i class="ai ai-biorxiv-square ai-3x"></i>](https://doi.org/10.1101/2022.05.03.490538)

- **Estimating the mean in the space of ranked phylogenetic trees**<br>
Lars Berling, Lena Collienne, and Alex Gavryushkin<br>
*Bioinformatics* 2024<br>
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