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Welcome to the OpenVibSpec wiki!

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Overview

Getting Started

New to OpenVibSpec? As a starting off point, you could read the Getting Started section of this wiki: https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Getting-Started

Pre-Trained Models

You can browse an expanded selection and history of models trained and compatible with OpenVibSpec here: https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Download-Pretrained-Models

See this page on how to use them in the workflow: https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Using-Pre-trained-Deep-Neural-Networks-in-Spectroscopy

Setting up OpenVibSpec

Manual setup

See: https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Setup-&-Running-OpenVibSpec

Docker

To use our pre-configured Docker images, see: https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Docker

Using OpenVibSpec for spectral data

Input

Learn more about spectral data and how to read and use it: https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Raw-Spectral-Data-Input

Correction of Mie Scattering

https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Correction-of-Mie-Scattering-in-IR-Spectroscopy

Dimensionality Reduction

https://github.com/RUB-Bioinf/OpenVibSpec/wiki/Dimensionality-Reduction-with--a-Stacked-Contractive-Autoencoder