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Mbarba/brc mode #180

Merged
merged 12 commits into from
Nov 2, 2023
Merged

Mbarba/brc mode #180

merged 12 commits into from
Nov 2, 2023

Commits on Oct 26, 2023

  1. brc_mode not used

    @MatBarba
    MatBarba committed Oct 26, 2023
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  2. filter_map not used in dump_sql

    @MatBarba
    MatBarba committed Oct 26, 2023
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  3. brc_mode not used by seq_region_dumper

    @MatBarba
    MatBarba committed Oct 26, 2023
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  4. remove unnecessary filter_map

    @MatBarba
    MatBarba committed Oct 26, 2023
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  5. Fix brc_mode: should be cast to int to work

    @MatBarba
    MatBarba committed Oct 26, 2023
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  6. Don't need to pass brc_mode here

    @MatBarba
    MatBarba committed Oct 26, 2023
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  7. brc_mode default defined in main config

    @MatBarba
    MatBarba committed Oct 26, 2023
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  8. move brc_mode to main nextflow config (0 default)

    @MatBarba
    MatBarba committed Oct 26, 2023
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Commits on Oct 31, 2023

  1. Differnt pipe tests for brc on/off

    @MatBarba
    MatBarba committed Oct 31, 2023
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  2. without brc -> no brc metadata

    @MatBarba
    MatBarba committed Oct 31, 2023
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Commits on Nov 1, 2023

  1. Update pipelines/nextflow/workflows/additional_seq_prepare/main.nf 

    Co-authored-by: J. Alvarez-Jarreta <[email protected]>
    @MatBarba @JAlvarezJarreta
    MatBarba and JAlvarezJarreta authored Nov 1, 2023
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  2. Update pipelines/nextflow/workflows/dumper_pipeline/main.nf

    @JAlvarezJarreta
    JAlvarezJarreta authored Nov 1, 2023
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