Rename UCell

BimberLab · May 31, 2024 · a42a90a · a42a90a
1 parent 3e74a67
commit a42a90a
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/R/GeneModules.R b/R/GeneModules.R
@@ -17,8 +17,8 @@ CalculateUCellScores <- function(seuratObj, forceRecalculate = FALSE, seed = Get
     TandNK_Activation = GetGeneSet('TandNK_Activation.1'),
     TandNK_ActivationCore = GetGeneSet('TandNK_Activation.Core'),
     Cytotoxicity = GetGeneSet('Cytotoxicity'),
-    Cytotoxicity.ABH = GetGeneSet('Cytotoxicity.ABH'),
-    Cytotoxicity.KM = GetGeneSet('Cytotoxicity.KM'),
+    Cytotoxicity.GzmABH = GetGeneSet('Cytotoxicity.GzmABH'),
+    Cytotoxicity.GzmKM = GetGeneSet('Cytotoxicity.GzmKM'),
     EffectorT = GetGeneSet('EffectorT'),
     NaiveT = GetGeneSet('NaiveT'),
     Glycolysis = GetGeneSet('Glycolysis'),

diff --git a/R/Phenotyping.R b/R/Phenotyping.R
@@ -299,8 +299,8 @@ GetGeneSet <- function(name) {
 
 .RegisterGeneSet('Cytotoxicity', c('PRF1', 'GNLY', 'NKG7', 'GZMA','GZMB','GZMH','GZMK','GZMM'))
 
-.RegisterGeneSet('Cytotoxicity.ABH', c('PRF1', 'GNLY', 'NKG7', 'GZMA','GZMB','GZMH'))
-.RegisterGeneSet('Cytotoxicity.KM', c('GZMK','GZMM'))
+.RegisterGeneSet('Cytotoxicity.GzmABH', c('PRF1', 'GNLY', 'NKG7', 'GZMA','GZMB','GZMH'))
+.RegisterGeneSet('Cytotoxicity.GzmKM', c('GZMK','GZMM'))
 .RegisterGeneSet('Metallothionein', c('MT1A', 'MT1E', 'MT1M', 'MT1X', 'MT2A', 'MT1JP'))
 .RegisterGeneSet('IEGs', c('FOS', 'JUN', 'ZFP36'))