methylpy 1.2.9

Fix a bug in merging allc files when there are too many input allc files

methylpy 1.2.5

Release tutorial
Fix a bug in allc-to-bigwig

methylpy 1.2.4

Fix a bug in generating SNP info

methylpy 1.2.3

Fix bug in help information due to percent symbol

methylpy 1.2.2

Update DMRfind to make sure to filter out DMRs with all sample categories assigned to the same side (all hypo- or all hyper-)

methylpy 1.2.1

Fix bug on DMRfind due to modification on filter-allc

methylpy 1.2.0

• Add options to apply SNP filter on allc files using filter-allc
• Add multiprocess option in filter-allc
• Add merge snp information option in merge-allc
• Change the default of --min-mapq to 30
• Minor bug fixed

methylpy 1.1.9

Fix bug regarding to --add-snp-info

methylpy 1.1.8

• fix bug regarding --add-snp-info
• add --min-mapq option to filter out reads with low mapping quality

methylpy 1.1.7

Fix bin_size issue in --allc-to-bigwig