Merge branch 'ltar'

CHANGELOG.md

@@ -1,6 +1,77 @@
 Change Log for GHG Monitoring Tower Program
 ===========================================
 
+Next release
+------------
+
+> This release requires operating system `CR3000.Std.31` or newer. 
+
+<p></p>
+
+> Previous telemetry integrations (email, ScadaBR) have been removed in this
+> version.
+
+<p></p>
+
+> The data processing core is now built upon [EasyFlux-DL by Campbell 
+> Scientific](www.campbellsci.com/easyflux-dl). This represents a substantial 
+> improvement in near real-time evaluation of carbon and energy fluxes.
+
+### Data Table Changes
+
+* Remove 5-min flux/met and soil data tables
+* Remove references to Picarro or Los Gatos instruments from `extra_info` table
+* Remove conditionally-included data table `tsdata_extra`
+* Fix issue which caused column `hfp_installed` in data table `site_info` to
+  always be false
+* New columns associated with alt. CO2 flux calculations (see *Other changes*)
+    * `CO2_hf` in `tsdata` is carbon dioxide density derived using high-freq
+      sonic temperature instead of thermistor temperature
+    * in `stats30` table:
+        * `Fc_hf_wpl` is CO2 flux with WPL corrections
+        * `CO2_hf_mg_m3_Avg` is mean CO2 density
+        * `CO2_hf_mg_m3_Std` is standard deviation of CO2 density
+
+### Instrumentation Changes
+
+* Change soil temp/moisture probes in vertical profile and in layer above soil
+  heat flux plates (8x Decagon Devices 5TM &rarr; 6x Acclima TDR-315L)
+* Change soil temperature probes in layer above soil heat flux plates 
+  (2x CSI model 109 probes &rarr; 1x CSI averaging thermocouple)
+* Remove prototype NDVI/PRI sensors (Decagon Devices)
+* Change PAR sensor back to LI190SB with Campbell Scientific-specific cabling
+  (versus Licor direct-purchase LI190R unit)
+* Significant revisions to datalogger wiring scheme
+* Add door sensor switch
+
+### Other changes
+
+* Remove scheduled reporting to ScadaBR instance
+* Remove automated email reporting
+* Improved settings menu provides guidance on units where appropriate
+* Produces two carbon dioxide flux estimates: the second value `Fc_hf_wpl` is
+  calculated using CO2 density derived using high-frequency sonic temperature
+  instead of slow-response thermistor temperature; for more information, refer
+  to http://dx.doi.org/10.1016/j.agrformet.2016.07.018
+
+### Changes w.r.t EasyFlux v1.0
+
+* Incorporate updates from EasyFlux v1.1 release
+    * FIX: correct transposed values in constant used for dewpoint calculations
+    * Non-substantive formatting changes
+* Increased instrumentation support
+    * Additional rain gage models (TE525, TE525WS, TE525 or TE525MM used with
+      8" funnel adapter)
+    * Additional temperature/humidity probes (HC2S3, HMP45C)
+    * Cup & vane wind set (MetOne 034B)
+    * GPS receiver (GPS16X-HVS)
+    * Additional soil temperature/water content probes
+        * Acclima TDR-315L
+        * Decagon Devices 5TM
+* Reintroduce vertical profile of soil tmpr/VWC probes (TDR-315L or 5TM)
+* Support for door sensor switch
+
+
 
 
 Initial commit

README.md

@@ -24,8 +24,28 @@ and access credentials.
 
 * [CR3000](https://campbellsci.com/cr3000)
     * network-enabled with an [NL115](https://campbellsci.com/nl115) module
-    * `CR3000.Std.27` or newer firmware
-* Sensors and hardware (see documentation)
+    * `CR3000.Std.31` or newer firmware
+* Base sensor suite
+    * Infrared CO<sub>2</sub>/H<sub>2</sub>O analyzer with ultrasonic 
+      anemometer ([EC150](https://www.campbellsci.com/ec150) + 
+      [CSAT3A](https://www.campbellsci.com/csat3a))
+    * Cup and vane wind set ([034B](https://www.campbellsci.com/034b))
+    * Temperature/humidity probe ([HMP-155A](https://www.campbellsci.com/hmp155a))
+    * Net radiometer ([NL-Lite2](https://www.campbellsci.com/nr-lite2))
+    * <acronym title="photosynthetically active radiation">PAR</acronym> sensor
+      ([LI-190SB](https://www.campbellsci.com/li190sb-l))
+    * Tipping bucket rain gage ([TE525WS](https://www.campbellsci.com/te525ws-l))
+* Optional sensors
+    * Soil moisture/temperature probes ([TDR-315L](http://www.acclima.com))
+    * Soil heat flux plates ([HFP01](https://www.campbellsci.com/hfp01))
+    * Spectral reflectance (<acronym title="normalized difference vegetation
+      index">NDVI</acronym>/<acronym title="photochemical reflectance 
+      index">PRI</acronym>) sensors ([SRS series](http://www.decagon.com/en/canopy/canopy-measurements/spectral-reflectance-sensor-srs/))
+* Communications & power hardware
+    * GPS receiver ([GPS16X-HVS](https://www.campbellsci.com/gps16x-hvs))
+    * modem
+    * ?
+
 
 
 ### License ####

doc/_sources.txt

@@ -1,32 +1,46 @@
-http://s.campbellsci.com/documents/us/manuals/109ss.pdf    CSI 109SS Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/cr3000.pdf    CSI CR3000 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/cs616.pdf    CSI CS616 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/csat3.pdf    CSI CSAT3A Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/ec150.pdf    CSI EC150 EC100 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/enclosures.pdf    CSI Enclosure Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/gps16x-hvs.pdf    CSI Garmin GPS16X-HVS Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/hmp155a.pdf    CSI HMP155A Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/hfp01.pdf    CSI Hukseflux HFP01 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/hfp01sc.pdf    CSI Hukseflux HFP01SC Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/li190sb.pdf    CSI LICOR LI190SB Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/loggernet.pdf    CSI LoggerNet Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/034b.pdf    CSI MetOne 034B Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/sunsaver.pdf    CSI MorningStar SunSaver10 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/nl115.pdf    CSI NL115 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/nr-lite2.pdf    CSI Kipp&Zonen NR-Lite2 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/ravenxtv.pdf    CSI Sierra Wireless RavenXT Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/sc105.pdf    CSI SC105 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/sp70.pdf    CSI SP70 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/te525.pdf    CSI TE525 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/ut10.pdf    CSI UT10 Manual.pdf
-http://s.campbellsci.com/documents/us/manuals/hmp155a.pdf    CSI Vaisala HMP155A Manual.pdf
-http://manuals.decagon.com/Integration%20Guides/5TM%20Integrators%20Guide.pdf    Decagon 5TM Integrators Guide.pdf
-http://manuals.decagon.com/Manuals/13441_5TM_Web.pdf    Decagon 5TM Manual.pdf
+# daq/hardware/power/comm
+http://s.campbellsci.com/documents/us/manuals/cr3000.pdf    CSI CR3000 Operator's Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/nl115.pdf    CSI NL115 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/ut10.pdf    CSI UT10 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/enclosures.pdf    CSI Enclosure Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/sunsaver.pdf    MorningStar SunSaver10 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/sp70.pdf    CSI SP70 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/gps16x-hvs.pdf    CSI GPS16X-HVS Instruction Manual.pdf
+http://static.garmincdn.com/pumac/GPS_16x_tech_specs.pdf    Garmin GPS16x Technical Specifications.pdf
+http://s.campbellsci.com/documents/us/manuals/sc105.pdf    CSI SC105 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/ravenxtv.pdf    CSI Sierra Wireless RavenXT Instruction Manual.pdf
+http://web.archive.org/web/20170407210010/https://www.sierrawireless.com/~/media/support_downloads/airlink/docs/user_guides/rvn_pp_x_userguides/raven_x_evdo_userguide.ashx    Sierra Wireless Raven X User Guide.pdf
+http://web.archive.org/web/20170407210536/https://source.sierrawireless.com/~/media/support_downloads/airlink/docs/user_guides/rvn_pp_x_userguides/raven_xt_gprs_userguide.ashx?la=en    Sierra Wireless Raven XT User Guide.pdf
+
+# instruments
+http://s.campbellsci.com/documents/us/manuals/ec150.pdf    CSI EC150 EC100 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/csat3.pdf    CSI CSAT3A Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/034b.pdf    CSI 034B Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/hmp155a.pdf    CSI HMP155A Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/nr-lite2.pdf    CSI NR-Lite2 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/li190sb.pdf    CSI LI190SB Instruction Manual.pdf
+https://s.campbellsci.com/documents/us/manuals/li190r.pdf    CSI LI190R Instruction Manual.pdf
+https://www.licor.com/documents/8yfdtw1rs27w93vemwp6    LICOR Terrestrial Quantum Sensors.pdf
+http://s.campbellsci.com/documents/us/manuals/te525.pdf    CSI TE525 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/hfp01.pdf    CSI HFP01 Instruction Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/hfp01sc.pdf    CSI HFP01SC Instruction Manual.pdf
+http://www.hukseflux.com/sites/default/files/product_manual/HFP01_HFP03_manual_v1620.pdf    Hukseflux HFP01 & HFP03 User Manual.pdf
+http://s.campbellsci.com/documents/us/manuals/tcav.pdf    CSI TCAV Instruction Manual.pdf
+http://manuals.decagon.com/Manuals/14597_SRS_Web.pdf    Decagon SRS Sensors Operator's Manual.pdf
+http://manuals.decagon.com/Integration%20Guides/SRS-N%20Integrators%20Guide.pdf    Decagon SRS-NDVI Integrator Guide.pdf
+http://manuals.decagon.com/Integration%20Guides/SRS-P%20Integrators%20Guide.pdf    Decagon SRS-PRI Integrator Guide.pdf
 http://www.decagon.com/assets/Uploads/SRS-pair-example-program.CR1.zip    Decagon SRS Example CR1K Program.zip
-http://manuals.decagon.com/Manuals/14597_SRS_Web.pdf    Decagon SRS Sensors Manual.pdf
-http://manuals.decagon.com/Integration%20Guides/SRS-N%20Integrators%20Guide.pdf    Decagon SRS-NDVI Integrators Guide.pdf
-http://manuals.decagon.com/Integration%20Guides/SRS-P%20Integrators%20Guide.pdf    Decagon SRS-PRI Integrators Guide.pdf
-http://static.garmincdn.com/pumac/GPS_16x_tech_specs.pdf    Garmin GPS16x tech specs.pdf
-https://dl.boxcloud.com/d/1/dGyDg84ynFgwGVxEeguRngz7xF5Zla-8WHTKXkba68dqkbP_BwksVgZCbtLI72-NfXO7MuaQMUQWobsED51um0Z9IJn-K__-eC8kVGjfMvYysf7we7tB0y-wwIqj0PpkPJB3u5iYrMpz0_3pFgLelXDfPXAJoCgz590aECX4ojbxbD8c2BbLkTbnNzenoaraGw1TNgJh0we0ZC1ZwZaU_M2fNZyD8Fjner3d9-n45yCMcLIMZMpb7-JGYfeQYlTTWLVG5s5E1hsDlbS0NRFwbsMHuJGwVZxgr_VLmmCj-LxmDiY3cb3XW8UpHcbeqdIjyFFF1CeYBvsWQGIq8SSy5Dr0cLkok77SDKMz8kuROaoCWCsBOBJN90R30tZmdKwZW3595ByqBT2FPgABfyGGJlKt8I8SET1BffRAolGY662At1EPipvKBtAxjCw2YU8QRMQprgsIQfKhbzc4iUgQK5gmuF0_MGfMKMyFQZo8P3sC3wYdC9ffrUYxfT_4UUocjIFG2lzgep3edHaFbWH6ayhEeujisKfELgBiWkfBD7Pms5qmMNrE7wFxLCPIRYZvAzqYs68gvZoXqu2y654DJcaVDMrGiY-kHxgjRfmBfOA6fyadaQVIx83R8p_awSvLPUxCZ_27AZ0zUVCWw-TTxRFtUWX5RfwiGJ2c8_MlsuxXpQRNdIKR7DTklRW_4BfCct_wDKbAujAPEI6kvBqXtNIJaLSghgTbWH5brh3JNGWvcJvu4VDQxSGxHzqIdI0L49YcKEfxQmLGcIfWLgsmxY-sK8uUi7QQ4ljYLZ_AGx8grwsdN2BaHdFdDWNfVhx7jsjAthiMMOdGB63Qy6705hozinXTd1REaWoSXAcOsizdDMQzgl7pp6JYlqVa4n2d33wwxZw4_9NQGT4t5EKmFBWNeGKQINDDTmbGK8_LxYcXVFPF2SoODTmSzCpHxoHLgYQ9i3uZahEoB-F27FcXoVRmc4Jxgd6zgZJUkh08TERwTKdm8uD054IL0nT-eAqIQ0wJ-nE-MptFMs89WviY7dMUdYlR6DKMNph4VHbM2BwZZ-W4HCxJXu6bOJdkqrYNUEpwlH-_TtuyzYliWFRJz5hEc0W7PvdeJVbmWjW8JocuxJjQuRK6oImAQ4554eiWhqG6ooSEaubHl8t0tDLiq7JzyWfLJRPAKcoFhtn7FklVsicq7n4iD3BtMUxtCczhXoTn4W5DIUIyDz7k9tWZCL3Oy3I-Bfzz6SN0Ra9eYPUMdaCbGOSUuaKRPPf5ZE3m2kPsPBCCbQW-58p7wtR020Q5kC5I1z2_ZFte2YhnaSrG/download    LICOR Terrestrial Quantum Sensors.pdf
+http://www.acclima.com/poc7/prodlit/TDR-315%20User%20Manual.pdf    Acclima TDR-315 User Manual.pdf
+http://manuals.decagon.com/Manuals/13441_5TM_Web.pdf    Decagon Devices 5TM Manual.pdf
+http://manuals.decagon.com/Integration%20Guides/5TM%20Integrators%20Guide.pdf    Decagon Devices 5TM Integrator Guide.pdf
+
+ # software
+http://s.campbellsci.com/documents/us/manuals/loggernet.pdf    CSI LoggerNet Instruction Manual.pdf
+http://web.archive.org/web/20170407210818/https://www.sierrawireless.com/~/media/support_downloads/airlink/docs/user_guides/4.0.11/4112515_aleos%204.0.11%20configuration%20user%20guide_r7.ashx    Sierra Wireless ALEOS 4.0.11 User Guide.pdf
+
+# guidance
+https://www.licor.com/documents/3vmte7rs3d5zu6swhbum    LICOR LI-190 Quantum Sensor Calculation of Multiplier from Campbell Scientific Purchased Sensors.pdf
+https://www.licor.com/documents/3xc19obvbdjezj7ahhgl    LICOR Using LI-COR's Millivolt Adapters for Interfacing LI-COR Radiation Sensors to Voltage-reading Dataloggers.pdf
+https://www.licor.com/documents/liuswfuvtqn7e9loxaut    LICOR Principles of Radiation Measurement.pdf
 http://public.hortus.net.au/Portals/0/Page%20Content/H2Pro/Hortus%20Soil%20moisture%20probe%20installation%20instructions.pdf    Hortus Soil moisture probe installation instructions.pdf
 http://mea.com.au/upload/NEW/PRODUCT_Brochures/B83_Soil-Moisture_Sensor_Installation_Guide_Web.pdf    MEA Soil Moisture Sensor Installation Guide.pdf