keep output file generated by fasterq-dump based on input read catego…

…ry-- fixes
weng-lab · Nov 12, 2021 · cb1b928 · cb1b928
1 parent 3ec9951
commit cb1b928
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/build.gradle.kts b/build.gradle.kts
@@ -8,7 +8,7 @@ plugins {
 }
 
 group = "io.krews"
-version = "0.12.4"
+version = "0.12.5"
 
 repositories {
     maven { setUrl("http://dl.bintray.com/kotlin/kotlin-eap") }

diff --git a/src/main/kotlin/krews/executor/slurm/SlurmExecutor.kt b/src/main/kotlin/krews/executor/slurm/SlurmExecutor.kt
@@ -140,7 +140,6 @@ class SlurmExecutor(private val workflowConfig: WorkflowConfig) : LocallyDirecte
 
                 if(remoteDownloadInputFile is GeoInputFile)
                 {
-                    sbatchScript.append("singularity exec docker://$downloadImageName $downloadCommand\n")
                     var fileName = "${remoteDownloadInputFile.sraaccession}_${remoteDownloadInputFile.read}.fastq"
                     if(remoteDownloadInputFile.read===ReadCategory.READ_1)
                     {