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Release v0.7.0
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@Maarten-vd-Sande Maarten-vd-Sande released this 02 Feb 13:44
v0.7.0
db1738d

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Biggest change is that we revert back to snakemake 5.18 since higher versioned snakemake's cause instability.

Added

  • upset plot as QC for peak calling. Should give a first feeling about the distribution of peaks between samples/conditions.

Changed

  • downgraded the snakemake backend as snakemake 6+ is unstable for us.

Fixed

  • corrupt environment creation with libreadline for edgeR normalization.
  • subsampling causing a crash caused by bad syntax.
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