Tomato Analyzer

More information about this project can be found on the homepage.

References

To cite this software, please refer to the following publications:

• Development of a controlled vocabulary and software application to analyze fruit shape variation in and other plant species. Brewer, M.T., Lang, L., Fujimura, K., Dujmovic, N., Gray, S., and van der Knaap, E. Plant Physiology, 2006, 141, 15-25
• Tomato Analyzer-Color Test: a new tool for efficient digital phenotyping. Darrigues, A., Hall, J., van der Knaap, E. and Francis, D.M. J. Am. Soc. of Hort. Sci., 2008, 133, 579-586.
• Tomato Fruit Shape Analysis Using Morphometric and Morphology Attributes Implemented in Tomato Analyzer Software Program. Gonzalo, M.J. Brewer, M.T., Anderson, C., Sullivan, D., Gray, S., and van der Knaap, E. J. Am. Soc. of Hort. Sci., 2009, 134, 77-87

Acknowledgements

Tomato Analyzer was developed in collaboration with students from the AMRE program at the College of Wooster.

Note: @w-bonelli did not write and does not maintain this software, only moved it to GitHub.

Setup

1. Clone the repository.
2. Download the submodules, if necessary. We rely on rapidjson. The project page for that is found here. You should only have to change navigate to rapidjson/ inside of tomato-analyzer and run git submodule init, but stuff happens.
3. Download CVIPtools from here. At the time of writing, we are building against 5.5d.
4. Download CMake from here. You'll need this to build rapidjson. To build rapidjson:
   1. Open CMake.
   2. The source code should be path-to-tomato-analyzer/rapidjson.
   3. You're going to click Browse Build and create a new folder in rapidjson. Call this folder build.
   4. Select configure and then generate. We're building against VC100 currently. You might try something else.
5. At this point, you can open the Tomato Analyzer project located inside of tomato-analyzer. Do so.
6. Add rapidjson/include to the header search path. (Project Properties -> C/C++ -> Additional Include Directories)
7. Add the CVIPtools/include directory to the header search path.
8. Make sure that CVIPtools/lib is located inside of the Additional Library Directories. (Project Properties -> Linker -> General -> Additional Link Directories).
9. Make sure that CVIPtools/lib is an additional link dependency. (Project Properties -> Linker -> Input -> Additional Dependencies).

You should now be able to build.