Genetic Genie Methylation Pannel clone to execute it in local in case you don´t wat to upload your DNA data to the Internet due to confidenciality.
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Updated
Oct 20, 2024 - Python
Genetic Genie Methylation Pannel clone to execute it in local in case you don´t wat to upload your DNA data to the Internet due to confidenciality.
UGENE is free open-source cross-platform bioinformatics software
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
Official code repository for GATK versions 4 and up
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
Python application to compare ssNa secondary structures
Data intensive science for everyone.
Official git repository for Biopython (originally converted from CVS)
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
A tool to calculate lifetimes, average charge separation and dipole moments of excited states along DNA within the formalism of open quantum systems.
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Oligonucleotide Calculator
Representing biological sequences as Markov chains
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
QSLib is a package for interacting with Applied Biosystems' QuantStudio qPCR machines, intended for non-qPCR uses, such as DNA computing and molecular programming systems.
GENA-LM is a transformer masked language model trained on human DNA sequence.
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