align source and test file names (#1229)

tidymodels · Oct 21, 2024 · ea86def · ea86def
1 parent 2c32738
commit ea86def
Show file tree

Hide file tree

Showing 324 changed files with 329 additions and 329 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -644,113 +644,113 @@ RoxygenNote: 7.3.2
 Language: en-US
 Collate:
  'aaa-documentation-helper.R'
- 'null-and-default-tidiers.R'
- 'aer-tidiers.R'
- 'auc-tidiers.R'
- 'base-tidiers.R'
- 'bbmle-tidiers.R'
- 'betareg-tidiers.R'
- 'biglm-tidiers.R'
- 'bingroup-tidiers.R'
- 'boot-tidiers.R'
+ 'null-and-default.R'
+ 'aer.R'
+ 'auc.R'
+ 'base.R'
+ 'bbmle.R'
+ 'betareg.R'
+ 'biglm.R'
+ 'bingroup.R'
+ 'boot.R'
  'broom-package.R'
  'broom.R'
- 'btergm-tidiers.R'
- 'car-tidiers.R'
- 'caret-tidiers.R'
- 'cluster-tidiers.R'
- 'cmprsk-tidiers.R'
- 'data-frame-tidiers.R'
+ 'btergm.R'
+ 'car.R'
+ 'caret.R'
+ 'cluster.R'
+ 'cmprsk.R'
+ 'data-frame.R'
  'deprecated-0-7-0.R'
- 'drc-tidiers.R'
- 'emmeans-tidiers.R'
- 'epiR-tidiers.R'
- 'ergm-tidiers.R'
- 'fixest-tidiers.R'
- 'gam-tidiers.R'
- 'geepack-tidiers.R'
- 'glmnet-cv-glmnet-tidiers.R'
- 'glmnet-glmnet-tidiers.R'
- 'gmm-tidiers.R'
- 'hmisc-tidiers.R'
+ 'drc.R'
+ 'emmeans.R'
+ 'epiR.R'
+ 'ergm.R'
+ 'fixest.R'
+ 'gam.R'
+ 'geepack.R'
+ 'glmnet-cv-glmnet.R'
+ 'glmnet-glmnet.R'
+ 'gmm.R'
+ 'hmisc.R'
  'import-standalone-obj-type.R'
  'import-standalone-types-check.R'
- 'joinerml-tidiers.R'
- 'kendall-tidiers.R'
- 'ks-tidiers.R'
- 'lavaan-tidiers.R'
- 'leaps-tidiers.R'
- 'lfe-tidiers.R'
+ 'joinerml.R'
+ 'kendall.R'
+ 'ks.R'
+ 'lavaan.R'
+ 'leaps.R'
+ 'lfe.R'
  'list-irlba.R'
- 'list-optim-tidiers.R'
- 'list-svd-tidiers.R'
- 'list-tidiers.R'
- 'list-xyz-tidiers.R'
- 'lm-beta-tidiers.R'
- 'lmodel2-tidiers.R'
- 'lmtest-tidiers.R'
- 'maps-tidiers.R'
- 'margins-tidiers.R'
- 'mass-fitdistr-tidiers.R'
- 'mass-negbin-tidiers.R'
- 'mass-polr-tidiers.R'
- 'mass-ridgelm-tidiers.R'
- 'stats-lm-tidiers.R'
- 'mass-rlm-tidiers.R'
- 'mclust-tidiers.R'
- 'mediation-tidiers.R'
- 'metafor-tidiers.R'
- 'mfx-tidiers.R'
- 'mgcv-tidiers.R'
- 'mlogit-tidiers.R'
- 'muhaz-tidiers.R'
- 'multcomp-tidiers.R'
- 'nnet-tidiers.R'
+ 'list-optim.R'
+ 'list-svd.R'
+ 'list-xyz.R'
+ 'list.R'
+ 'lm-beta.R'
+ 'lmodel2.R'
+ 'lmtest.R'
+ 'maps.R'
+ 'margins.R'
+ 'mass-fitdistr.R'
+ 'mass-negbin.R'
+ 'mass-polr.R'
+ 'mass-ridgelm.R'
+ 'stats-lm.R'
+ 'mass-rlm.R'
+ 'mclust.R'
+ 'mediation.R'
+ 'metafor.R'
+ 'mfx.R'
+ 'mgcv.R'
+ 'mlogit.R'
+ 'muhaz.R'
+ 'multcomp.R'
+ 'nnet.R'
  'nobs.R'
- 'orcutt-tidiers.R'
- 'ordinal-clm-tidiers.R'
- 'ordinal-clmm-tidiers.R'
- 'plm-tidiers.R'
- 'polca-tidiers.R'
- 'psych-tidiers.R'
- 'stats-nls-tidiers.R'
- 'quantreg-nlrq-tidiers.R'
- 'quantreg-rq-tidiers.R'
- 'quantreg-rqs-tidiers.R'
- 'robust-glmrob-tidiers.R'
- 'robust-lmrob-tidiers.R'
- 'robustbase-glmrob-tidiers.R'
- 'robustbase-lmrob-tidiers.R'
- 'sp-tidiers.R'
- 'spdep-tidiers.R'
- 'speedglm-speedglm-tidiers.R'
- 'speedglm-speedlm-tidiers.R'
- 'stats-anova-tidiers.R'
- 'stats-arima-tidiers.R'
- 'stats-decompose-tidiers.R'
- 'stats-factanal-tidiers.R'
- 'stats-glm-tidiers.R'
- 'stats-htest-tidiers.R'
- 'stats-kmeans-tidiers.R'
- 'stats-loess-tidiers.R'
- 'stats-mlm-tidiers.R'
- 'stats-prcomp-tidiers.R'
- 'stats-smooth.spline-tidiers.R'
- 'stats-summary-lm-tidiers.R'
- 'stats-time-series-tidiers.R'
- 'survey-tidiers.R'
- 'survival-aareg-tidiers.R'
- 'survival-cch-tidiers.R'
- 'survival-coxph-tidiers.R'
- 'survival-pyears-tidiers.R'
- 'survival-survdiff-tidiers.R'
- 'survival-survexp-tidiers.R'
- 'survival-survfit-tidiers.R'
- 'survival-survreg-tidiers.R'
- 'systemfit-tidiers.R'
- 'tseries-tidiers.R'
+ 'orcutt.R'
+ 'ordinal-clm.R'
+ 'ordinal-clmm.R'
+ 'plm.R'
+ 'polca.R'
+ 'psych.R'
+ 'stats-nls.R'
+ 'quantreg-nlrq.R'
+ 'quantreg-rq.R'
+ 'quantreg-rqs.R'
+ 'robust-glmrob.R'
+ 'robust-lmrob.R'
+ 'robustbase-glmrob.R'
+ 'robustbase-lmrob.R'
+ 'sp.R'
+ 'spdep.R'
+ 'speedglm-speedglm.R'
+ 'speedglm-speedlm.R'
+ 'stats-anova.R'
+ 'stats-arima.R'
+ 'stats-decompose.R'
+ 'stats-factanal.R'
+ 'stats-glm.R'
+ 'stats-htest.R'
+ 'stats-kmeans.R'
+ 'stats-loess.R'
+ 'stats-mlm.R'
+ 'stats-prcomp.R'
+ 'stats-smooth.spline.R'
+ 'stats-summary-lm.R'
+ 'stats-time-series.R'
+ 'survey.R'
+ 'survival-aareg.R'
+ 'survival-cch.R'
+ 'survival-coxph.R'
+ 'survival-pyears.R'
+ 'survival-survdiff.R'
+ 'survival-survexp.R'
+ 'survival-survfit.R'
+ 'survival-survreg.R'
+ 'systemfit.R'
+ 'tseries.R'
  'utilities.R'
- 'vars-tidiers.R'
- 'zoo-tidiers.R'
+ 'vars.R'
+ 'zoo.R'
  'zzz.R'
 Config/testthat/edition: 3
diff --git a/R/aer-tidiers.R → R/aer.R b/R/aer-tidiers.R → R/aer.R
@@ -171,6 +171,6 @@ glance.ivreg <- function(x, diagnostics = FALSE, ...) {
  ret
 }
 
-#' @include null-and-default-tidiers.R
+#' @include null-and-default.R
 #' @export
 tidy.tobit <- tidy.default
diff --git a/R/auc-tidiers.R → R/auc.R b/R/auc-tidiers.R → R/auc.R
diff --git a/R/base-tidiers.R → R/base.R b/R/base-tidiers.R → R/base.R
diff --git a/R/bbmle-tidiers.R → R/bbmle.R b/R/bbmle-tidiers.R → R/bbmle.R
diff --git a/R/betareg-tidiers.R → R/betareg.R b/R/betareg-tidiers.R → R/betareg.R
diff --git a/R/biglm-tidiers.R → R/biglm.R b/R/biglm-tidiers.R → R/biglm.R
diff --git a/R/bingroup-tidiers.R → R/bingroup.R b/R/bingroup-tidiers.R → R/bingroup.R
diff --git a/R/boot-tidiers.R → R/boot.R b/R/boot-tidiers.R → R/boot.R
diff --git a/R/btergm-tidiers.R → R/btergm.R b/R/btergm-tidiers.R → R/btergm.R
diff --git a/R/car-tidiers.R → R/car.R b/R/car-tidiers.R → R/car.R
diff --git a/R/caret-tidiers.R → R/caret.R b/R/caret-tidiers.R → R/caret.R
diff --git a/R/cluster-tidiers.R → R/cluster.R b/R/cluster-tidiers.R → R/cluster.R
diff --git a/R/cmprsk-tidiers.R → R/cmprsk.R b/R/cmprsk-tidiers.R → R/cmprsk.R
diff --git a/R/data-frame-tidiers.R → R/data-frame.R b/R/data-frame-tidiers.R → R/data-frame.R
diff --git a/R/drc-tidiers.R → R/drc.R b/R/drc-tidiers.R → R/drc.R
diff --git a/R/emmeans-tidiers.R → R/emmeans.R b/R/emmeans-tidiers.R → R/emmeans.R
diff --git a/R/epiR-tidiers.R → R/epiR.R b/R/epiR-tidiers.R → R/epiR.R
diff --git a/R/ergm-tidiers.R → R/ergm.R b/R/ergm-tidiers.R → R/ergm.R
diff --git a/R/fixest-tidiers.R → R/fixest.R b/R/fixest-tidiers.R → R/fixest.R
diff --git a/R/gam-tidiers.R → R/gam.R b/R/gam-tidiers.R → R/gam.R
diff --git a/R/geepack-tidiers.R → R/geepack.R b/R/geepack-tidiers.R → R/geepack.R
diff --git a/R/glmnet-cv-glmnet-tidiers.R → R/glmnet-cv-glmnet.R b/R/glmnet-cv-glmnet-tidiers.R → R/glmnet-cv-glmnet.R
diff --git a/R/glmnet-glmnet-tidiers.R → R/glmnet-glmnet.R b/R/glmnet-glmnet-tidiers.R → R/glmnet-glmnet.R
diff --git a/R/gmm-tidiers.R → R/gmm.R b/R/gmm-tidiers.R → R/gmm.R
diff --git a/R/hmisc-tidiers.R → R/hmisc.R b/R/hmisc-tidiers.R → R/hmisc.R
diff --git a/R/joinerml-tidiers.R → R/joinerml.R b/R/joinerml-tidiers.R → R/joinerml.R
diff --git a/R/kendall-tidiers.R → R/kendall.R b/R/kendall-tidiers.R → R/kendall.R
diff --git a/R/ks-tidiers.R → R/ks.R b/R/ks-tidiers.R → R/ks.R
diff --git a/R/lavaan-tidiers.R → R/lavaan.R b/R/lavaan-tidiers.R → R/lavaan.R
diff --git a/R/leaps-tidiers.R → R/leaps.R b/R/leaps-tidiers.R → R/leaps.R
diff --git a/R/lfe-tidiers.R → R/lfe.R b/R/lfe-tidiers.R → R/lfe.R
diff --git a/R/list-optim-tidiers.R → R/list-optim.R b/R/list-optim-tidiers.R → R/list-optim.R
diff --git a/R/list-svd-tidiers.R → R/list-svd.R b/R/list-svd-tidiers.R → R/list-svd.R
diff --git a/R/list-xyz-tidiers.R → R/list-xyz.R b/R/list-xyz-tidiers.R → R/list-xyz.R
diff --git a/R/list-tidiers.R → R/list.R b/R/list-tidiers.R → R/list.R
diff --git a/R/lm-beta-tidiers.R → R/lm-beta.R b/R/lm-beta-tidiers.R → R/lm-beta.R
diff --git a/R/lmodel2-tidiers.R → R/lmodel2.R b/R/lmodel2-tidiers.R → R/lmodel2.R
diff --git a/R/lmtest-tidiers.R → R/lmtest.R b/R/lmtest-tidiers.R → R/lmtest.R
diff --git a/R/maps-tidiers.R → R/maps.R b/R/maps-tidiers.R → R/maps.R
diff --git a/R/margins-tidiers.R → R/margins.R b/R/margins-tidiers.R → R/margins.R
@@ -142,6 +142,6 @@ glance.margins <- function(x, ...) {
  return(ret)
 }
 
-#' @include null-and-default-tidiers.R
+#' @include null-and-default.R
 #' @export
 augment.margins <- augment.default
diff --git a/R/mass-fitdistr-tidiers.R → R/mass-fitdistr.R b/R/mass-fitdistr-tidiers.R → R/mass-fitdistr.R
diff --git a/R/mass-negbin-tidiers.R → R/mass-negbin.R b/R/mass-negbin-tidiers.R → R/mass-negbin.R
diff --git a/R/mass-polr-tidiers.R → R/mass-polr.R b/R/mass-polr-tidiers.R → R/mass-polr.R
diff --git a/R/mass-ridgelm-tidiers.R → R/mass-ridgelm.R b/R/mass-ridgelm-tidiers.R → R/mass-ridgelm.R
diff --git a/R/mass-rlm-tidiers.R → R/mass-rlm.R b/R/mass-rlm-tidiers.R → R/mass-rlm.R
@@ -58,7 +58,7 @@ confint.rlm <- confint.default
 #' @family rlm tidiers
 #' @seealso [MASS::rlm()]
 #' @export
-#' @include stats-lm-tidiers.R
+#' @include stats-lm.R
 tidy.rlm <- function(x, conf.int = FALSE, conf.level = .95, ...) {
  check_ellipses("exponentiate", "tidy", "rlm", ...)
 

diff --git a/R/mclust-tidiers.R → R/mclust.R b/R/mclust-tidiers.R → R/mclust.R
diff --git a/R/mediation-tidiers.R → R/mediation.R b/R/mediation-tidiers.R → R/mediation.R
diff --git a/R/metafor-tidiers.R → R/metafor.R b/R/metafor-tidiers.R → R/metafor.R
diff --git a/R/mfx-tidiers.R → R/mfx.R b/R/mfx-tidiers.R → R/mfx.R
diff --git a/R/mgcv-tidiers.R → R/mgcv.R b/R/mgcv-tidiers.R → R/mgcv.R
diff --git a/R/mlogit-tidiers.R → R/mlogit.R b/R/mlogit-tidiers.R → R/mlogit.R
diff --git a/R/muhaz-tidiers.R → R/muhaz.R b/R/muhaz-tidiers.R → R/muhaz.R
diff --git a/R/multcomp-tidiers.R → R/multcomp.R b/R/multcomp-tidiers.R → R/multcomp.R
diff --git a/R/nnet-tidiers.R → R/nnet.R b/R/nnet-tidiers.R → R/nnet.R
diff --git a/R/null-and-default-tidiers.R → R/null-and-default.R b/R/null-and-default-tidiers.R → R/null-and-default.R
diff --git a/R/orcutt-tidiers.R → R/orcutt.R b/R/orcutt-tidiers.R → R/orcutt.R
diff --git a/R/ordinal-clm-tidiers.R → R/ordinal-clm.R b/R/ordinal-clm-tidiers.R → R/ordinal-clm.R
diff --git a/R/ordinal-clmm-tidiers.R → R/ordinal-clmm.R b/R/ordinal-clmm-tidiers.R → R/ordinal-clmm.R
diff --git a/R/plm-tidiers.R → R/plm.R b/R/plm-tidiers.R → R/plm.R
diff --git a/R/polca-tidiers.R → R/polca.R b/R/polca-tidiers.R → R/polca.R
diff --git a/R/psych-tidiers.R → R/psych.R b/R/psych-tidiers.R → R/psych.R
diff --git a/R/quantreg-nlrq-tidiers.R → R/quantreg-nlrq.R b/R/quantreg-nlrq-tidiers.R → R/quantreg-nlrq.R
@@ -90,6 +90,6 @@ glance.nlrq <- function(x, ...) {
 #' @export
 #' @seealso [augment()], [quantreg::nlrq()]
 #' @family quantreg tidiers
-#' @include stats-nls-tidiers.R
+#' @include stats-nls.R
 #'
 augment.nlrq <- augment.nls
diff --git a/R/quantreg-rq-tidiers.R → R/quantreg-rq.R b/R/quantreg-rq-tidiers.R → R/quantreg-rq.R
diff --git a/R/quantreg-rqs-tidiers.R → R/quantreg-rqs.R b/R/quantreg-rqs-tidiers.R → R/quantreg-rqs.R
diff --git a/R/robust-glmrob-tidiers.R → R/robust-glmrob.R b/R/robust-glmrob-tidiers.R → R/robust-glmrob.R
diff --git a/R/robust-lmrob-tidiers.R → R/robust-lmrob.R b/R/robust-lmrob-tidiers.R → R/robust-lmrob.R
diff --git a/R/robustbase-glmrob-tidiers.R → R/robustbase-glmrob.R b/R/robustbase-glmrob-tidiers.R → R/robustbase-glmrob.R
diff --git a/R/robustbase-lmrob-tidiers.R → R/robustbase-lmrob.R b/R/robustbase-lmrob-tidiers.R → R/robustbase-lmrob.R
diff --git a/R/sp-tidiers.R → R/sp.R b/R/sp-tidiers.R → R/sp.R
diff --git a/R/spdep-tidiers.R → R/spdep.R b/R/spdep-tidiers.R → R/spdep.R
diff --git a/R/speedglm-speedglm-tidiers.R → R/speedglm-speedglm.R b/R/speedglm-speedglm-tidiers.R → R/speedglm-speedglm.R
diff --git a/R/speedglm-speedlm-tidiers.R → R/speedglm-speedlm.R b/R/speedglm-speedlm-tidiers.R → R/speedglm-speedlm.R
@@ -24,7 +24,7 @@
 #' @export
 #' @family speedlm tidiers
 #' @seealso [speedglm::speedlm()], [tidy.lm()]
-#' @include stats-lm-tidiers.R
+#' @include stats-lm.R
 tidy.speedlm <- function(x, conf.int = FALSE, conf.level = 0.95, ...) {
  check_ellipses("exponentiate", "tidy", "speedlm", ...)
 

diff --git a/R/stats-anova-tidiers.R → R/stats-anova.R b/R/stats-anova-tidiers.R → R/stats-anova.R
diff --git a/R/stats-arima-tidiers.R → R/stats-arima.R b/R/stats-arima-tidiers.R → R/stats-arima.R
diff --git a/R/stats-decompose-tidiers.R → R/stats-decompose.R b/R/stats-decompose-tidiers.R → R/stats-decompose.R
diff --git a/R/stats-factanal-tidiers.R → R/stats-factanal.R b/R/stats-factanal-tidiers.R → R/stats-factanal.R
diff --git a/R/stats-glm-tidiers.R → R/stats-glm.R b/R/stats-glm-tidiers.R → R/stats-glm.R
@@ -70,7 +70,7 @@ tidy.glm <- function(x, conf.int = FALSE, conf.level = .95,
 #' @export
 #' @family lm tidiers
 #' @seealso [stats::glm()]
-#' @include stats-lm-tidiers.R
+#' @include stats-lm.R
 augment.glm <- function(x,
  data = model.frame(x),
  newdata = NULL,

diff --git a/R/stats-htest-tidiers.R → R/stats-htest.R b/R/stats-htest-tidiers.R → R/stats-htest.R
diff --git a/R/stats-kmeans-tidiers.R → R/stats-kmeans.R b/R/stats-kmeans-tidiers.R → R/stats-kmeans.R
diff --git a/R/stats-lm-tidiers.R → R/stats-lm.R b/R/stats-lm-tidiers.R → R/stats-lm.R
diff --git a/R/stats-loess-tidiers.R → R/stats-loess.R b/R/stats-loess-tidiers.R → R/stats-loess.R
diff --git a/R/stats-mlm-tidiers.R → R/stats-mlm.R b/R/stats-mlm-tidiers.R → R/stats-mlm.R
diff --git a/R/stats-nls-tidiers.R → R/stats-nls.R b/R/stats-nls-tidiers.R → R/stats-nls.R
diff --git a/R/stats-prcomp-tidiers.R → R/stats-prcomp.R b/R/stats-prcomp-tidiers.R → R/stats-prcomp.R
diff --git a/R/stats-smooth.spline-tidiers.R → R/stats-smooth.spline.R b/R/stats-smooth.spline-tidiers.R → R/stats-smooth.spline.R
diff --git a/R/stats-summary-lm-tidiers.R → R/stats-summary-lm.R b/R/stats-summary-lm-tidiers.R → R/stats-summary-lm.R
diff --git a/R/stats-time-series-tidiers.R → R/stats-time-series.R b/R/stats-time-series-tidiers.R → R/stats-time-series.R
diff --git a/R/survey-tidiers.R → R/survey.R b/R/survey-tidiers.R → R/survey.R
diff --git a/R/survival-aareg-tidiers.R → R/survival-aareg.R b/R/survival-aareg-tidiers.R → R/survival-aareg.R
diff --git a/R/survival-cch-tidiers.R → R/survival-cch.R b/R/survival-cch-tidiers.R → R/survival-cch.R
diff --git a/R/survival-coxph-tidiers.R → R/survival-coxph.R b/R/survival-coxph-tidiers.R → R/survival-coxph.R
diff --git a/R/survival-pyears-tidiers.R → R/survival-pyears.R b/R/survival-pyears-tidiers.R → R/survival-pyears.R
diff --git a/R/survival-survdiff-tidiers.R → R/survival-survdiff.R b/R/survival-survdiff-tidiers.R → R/survival-survdiff.R
diff --git a/R/survival-survexp-tidiers.R → R/survival-survexp.R b/R/survival-survexp-tidiers.R → R/survival-survexp.R
diff --git a/R/survival-survfit-tidiers.R → R/survival-survfit.R b/R/survival-survfit-tidiers.R → R/survival-survfit.R
diff --git a/R/survival-survreg-tidiers.R → R/survival-survreg.R b/R/survival-survreg-tidiers.R → R/survival-survreg.R
diff --git a/R/systemfit-tidiers.R → R/systemfit.R b/R/systemfit-tidiers.R → R/systemfit.R
diff --git a/R/tseries-tidiers.R → R/tseries.R b/R/tseries-tidiers.R → R/tseries.R
diff --git a/R/vars-tidiers.R → R/vars.R b/R/vars-tidiers.R → R/vars.R
diff --git a/R/zoo-tidiers.R → R/zoo.R b/R/zoo-tidiers.R → R/zoo.R
diff --git a/man/augment.Mclust.Rd b/man/augment.Mclust.Rd
diff --git a/man/augment.betamfx.Rd b/man/augment.betamfx.Rd
diff --git a/man/augment.betareg.Rd b/man/augment.betareg.Rd
diff --git a/man/augment.clm.Rd b/man/augment.clm.Rd
diff --git a/man/augment.coxph.Rd b/man/augment.coxph.Rd
diff --git a/man/augment.decomposed.ts.Rd b/man/augment.decomposed.ts.Rd
diff --git a/man/augment.drc.Rd b/man/augment.drc.Rd
diff --git a/man/augment.factanal.Rd b/man/augment.factanal.Rd
diff --git a/man/augment.felm.Rd b/man/augment.felm.Rd
diff --git a/man/augment.fixest.Rd b/man/augment.fixest.Rd
diff --git a/man/augment.gam.Rd b/man/augment.gam.Rd
diff --git a/man/augment.glm.Rd b/man/augment.glm.Rd
diff --git a/man/augment.glmRob.Rd b/man/augment.glmRob.Rd
diff --git a/man/augment.htest.Rd b/man/augment.htest.Rd
diff --git a/man/augment.ivreg.Rd b/man/augment.ivreg.Rd
diff --git a/man/augment.kmeans.Rd b/man/augment.kmeans.Rd
diff --git a/man/augment.lm.Rd b/man/augment.lm.Rd
diff --git a/man/augment.lmRob.Rd b/man/augment.lmRob.Rd
diff --git a/man/augment.loess.Rd b/man/augment.loess.Rd