CI #1976
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| name: CI | |
| on: | |
| push: | |
| paths-ignore: | |
| - "README.md" | |
| - "**/docs/**" | |
| - ".github/workflows/docs.yml" | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| schedule: | |
| - cron: "0 11 * * *" | |
| jobs: | |
| skip_duplicate: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| github_token: ${{ github.token }} | |
| concurrent_skipping: never | |
| skip_after_successful_duplicate: true | |
| paths_ignore: '["**/README.md", "**/docs/**"]' | |
| do_not_skip: '["pull_request", "schedule"]' | |
| test-pip: | |
| name: Test with Pip install | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| os: ["ubuntu-latest", "macos-latest", "macos-12"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| pip install --upgrade flake8 coverage pytest-cov cython | |
| if [[ ${{matrix.os}} == macos-latest ]]; | |
| then | |
| brew update | |
| brew install hdf5 | |
| fi | |
| pip install -e . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 | |
| - name: Test pip on ${{ matrix.python-version }} | |
| run: | | |
| python -m pytest -vv --cov=astromodels/ --cov-report=xml --junitxml=junit/test-results.xml | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| - name: Publish Unit Test Results Ubuntu | |
| uses: EnricoMi/publish-unit-test-result-action@v2 | |
| if: runner.os == 'Linux' | |
| with: | |
| files: junit/test-*.xml | |
| comment_mode: off | |
| - name: Publish Unit Test Results MacOS | |
| uses: EnricoMi/publish-unit-test-result-action/composite@v2 | |
| if: runner.os == 'macOS' | |
| with: | |
| files: junit/test-*.xml | |
| comment_mode: off | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| files: ./coverage1.xml,./coverage2.xml | |
| directory: ./coverage/reports/ | |
| test-conda: | |
| name: Test Conda version | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "macos-12"] | |
| python-version: [3.9] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| # - name: Cache conda | |
| # uses: actions/cache@v4 | |
| # env: | |
| # # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| # CACHE_NUMBER: 0 | |
| # with: | |
| # path: ~/conda_pkgs_dir | |
| # key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('ci/environment.yml') }} | |
| - name: Add conda ${{ matrix.python-version }} to system path | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: "test_env" | |
| auto-activate-base: false | |
| architecture: "x64" | |
| #mamba-version: "*" | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| auto-update-conda: true | |
| environment-file: ci/environment.yml | |
| use-only-tar-bz2: true | |
| channel-priority: strict | |
| channels: conda-forge, xspecmodels | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64 gfortran_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| # On macOS we also need the conda libx11 libraries used to build xspec | |
| # We also need to pin down ncurses, for now only on macos. | |
| xorg="xorg-libx11" | |
| fi | |
| export PKG_VERSION=$(python -c "import versioneer;print(versioneer.get_version())") | |
| mamba install ${PKG} codecov pytest-cov git flake8 | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 | |
| - name: Test conda install | |
| shell: bash -l {0} | |
| run: | | |
| echo "======> importing XSPEC..." | |
| python -c "import astromodels.xspec" | |
| python -m pytest -vv --cov=astromodels --cov-report=xml | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| files: ./coverage1.xml,./coverage2.xml | |
| directory: ./coverage/reports/ | |