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(feat): Linear GENOT #662
(feat): Linear GENOT #662
Commits on Mar 15, 2023
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adapt callbacks and rename tag
cost
tocost_matrix
(#426)* rename tag cost to cost_matrix * fix renaming * [CI skip], adapt callback * incorporate requested changes * add test for quad custom callback * adapt kwargs for callback * fix handle_joint_attr * incorporate requested changes
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Feature/correlation test (#423)
* fix test in FGWProblem * add correlation test * add first test for correlation computation * add more tests * fix tests * add tfs to compute_feature_correlation * add testing for no nans in compute_feature_correlation * incorporate requested changes * fix docstring
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fix sankey return statement (#428)
* fix sankey return statement * adapt test * adapt return_fig
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* fix return type in mpl * change import acronyms * fix tests
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Simplify linear operator (#431)
* Simplify linear operator * Simplify `align`, fix test
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Feature/interpolate colors sankey (#434)
* fix return type in mpl * change import acronyms * fix tests * add interpolation option to sankey * add test to interpolate color * define colors for pull/push` * adapt tests * introduce axes in mpl.push/pull * incorporate requested changes * change default color * adapt plotting * introduce scaling * fix scale * make start/end categorical in plot * regenerate images
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* Remove `FGWSolver` * Fix `tox.ini` * Fix wrong shape check * Use pure GW in generic solver * Update tests
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fix bug in SinkhornProblem (#442)
* fix bug in SinkhornProblem * fix tox.ini
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make push/pull always use source/target (#443)
* make push/pull always use source/target * fix bug in StarPolicy _apply * adapt plotting to source/target
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fix strip plotting in sankey (#445)
* fix strip plotting in sankey * simplify code
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Feature/spearman correlation (#444)
* add spearman correlation * add tests * adapt tests
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* make push/pull plot in good order * [CI skip], try setting adata.uns color explicitly * [CI skip], fix copying of adata * fix pre commits * fix bug
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Expose marginal kwargs for
moscot.temporal
and check for numeric ty……pe of `temporal_key` (#449) * make marginal_kwargs explicit in temporal problems * introduce check for numeric dtype in temporal mixin * add alternative way for marginal prior * adapt tolerances in tests * correct docs * fix bug * Fix math rendering * fix test Co-authored-by: Michal Klein <[email protected]>
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Bug/docs generic analysis mixin (#455)
* adapt plot_convergence * remove temporal-alluding docs in generic analysis mixin
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* adapt plot_convergence * remove temporal-alluding docs in generic analysis mixin * docs suggestions
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Tests/spatiotemporalproblem (#464)
* add more tests for spatiotemporalProblem * move some functions from TemporalProblem to TemporalMixin * add tests LineageProblem * fix tests
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Feature/move taggedarray (#457)
* adapt plot_convergence * remove temporal-alluding docs in generic analysis mixin * docs suggestions * move tagged array * move taggedarray back to solvers
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Commits on Mar 21, 2023
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Commits on Mar 23, 2023
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Merge pull request #9 from theislab/condot_revamp
Updated conditional not pipeline
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Merge pull request #7 from theislab/conditional_not_precommit
Added conditional neural ot
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Commits on Mar 28, 2023
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Merge pull request #11 from theislab/feature/docs
[ci skip] start docs
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Merge pull request #12 from theislab/temporal_neural_test
added temporal neural test
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Commits on Mar 31, 2023
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Merge pull request #18 from theislab/neural_tests_local
The failing tests will be resolved with the next release of ott-jax, it's already fixed in the main branch.
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Merge remote-tracking branch 'origin/feature/add_monge_gap' into feat…
…ure/add_monge_gap
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Merge remote-tracking branch 'origin/feature/add_monge_gap' into feat…
…ure/add_monge_gap
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Merge pull request #26 from theislab/feature/add_callback
Feature/add callback
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[pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
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Merge branch 'ig/neural_solvers' of github.com:theislab/moscot into i…
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