fix: No unfiltered files shouldn't always fail (#122)

* fix: No unfiltered files shouldn't always fail
stjude · Jan 23, 2024 · 1eb1fb2 · 1eb1fb2
1 parent 366000e
commit 1eb1fb2
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/src/scripts/annotate.pl b/src/scripts/annotate.pl
@@ -174,8 +174,8 @@
  `cat $out_dir/*/unfiltered.internal.txt > $unfiltered_file`;
  if ($?){
  my $err = $!;
- print STDERR "Error combining internal events: $err\n";
- exit 2;
+ print STDERR "Warning: combining internal events failed: $err\n";
+ print STDERR "No events may be a valid result.\n";
  } 
  }
 }
@@ -184,8 +184,8 @@
  `cat $out_dir/*/unfiltered.fusion.txt > $unfiltered_file`;
  if ($?){
  my $err = $!;
- print STDERR "Error combining fusion events: $err\n";
- exit 3;
+ print STDERR "Warning: combining fusion events failed: $err\n";
+ print STDERR "No events may be a valid result.\n";
  }
  }
 }