Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

feat: load builtin snakemake executor plugins #73

Merged
merged 2 commits into from
Oct 4, 2024
Merged

feat: load builtin snakemake executor plugins #73

Changes from 1 commit
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
c7198a6
feat: load builtin snakemake executor plugins
johanneskoester Oct 4, 2024
8fa24be
bump dep
johanneskoester Oct 4, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 15 additions & 0 deletions snakemake_interface_executor_plugins/registry/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,3 +57,18 @@ def expected_attributes(self) -> Mapping[str, AttributeType]:
kind=AttributeKind.CLASS,
),
}

def collect_plugins(self):
"""Collect plugins and call register_plugin for each."""
super().collect_plugins()

try:
from snakemake.executors import local as local_executor
from snakemake.executors import dryrun as dryrun_executor
from snakemake.executors import touch as touch_executor
except ImportError:
# snakemake not present, proceed without adding these plugins
return

for executor in [local_executor, dryrun_executor, touch_executor]:
self.register_plugin(executor.__name__, executor)
Loading