feat: add ability to pass group args to remote jobs

snakemake · Jan 16, 2024 · bcfd819 · bcfd819
1 parent ff5b51d
commit bcfd819
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Showing 3 changed files with 3 additions and 0 deletions.
diff --git a/snakemake_interface_executor_plugins/cli.py b/snakemake_interface_executor_plugins/cli.py
@@ -8,6 +8,7 @@ def general_args(
         self,
         pass_default_storage_provider_args: bool = True,
         pass_default_resources_args: bool = False,
+        pass_group_args: bool = False,
     ) -> str:
         ...
 

diff --git a/snakemake_interface_executor_plugins/executors/real.py b/snakemake_interface_executor_plugins/executors/real.py
@@ -151,6 +151,7 @@ def format_job_exec(self, job: JobExecutorInterface) -> str:
         general_args = self.workflow.spawned_job_args_factory.general_args(
             pass_default_storage_provider_args=self.common_settings.pass_default_storage_provider_args,
             pass_default_resources_args=self.common_settings.pass_default_resources_args,
+            pass_group_args=self.common_settings.pass_group_args,
         )
         precommand = self.workflow.spawned_job_args_factory.precommand(
             auto_deploy_default_storage_provider=self.common_settings.auto_deploy_default_storage_provider

diff --git a/snakemake_interface_executor_plugins/settings.py b/snakemake_interface_executor_plugins/settings.py
@@ -59,6 +59,7 @@ class CommonSettings:
     pass_envvar_declarations_to_cmd: bool = True
     auto_deploy_default_storage_provider: bool = True
     init_seconds_before_status_checks: int = 0
+    pass_group_args: bool = False
 
     @property
     def local_exec(self):