Add CLI command for summer school data preparation

README.md

@@ -12,7 +12,7 @@ pip install b2aiprep
 ```
 
 ## Usage
-Four commands are available through the CLI:
+See commands available through the CLI:
 
 ```bash
 b2aiprep-cli --help
@@ -119,10 +119,11 @@ See the [tutorial.ipynb](docs/tutorial.ipynb) for a few use examples of data in
 This command organizes the data with the BIDS-like conversion tool, extracts audio features, and saves the whole thing
 as a .tar file for easy distribution for the Bridge2AI Summer School:
 
-```python3 b2aiprep/src/b2aiprep/summer_school_data.py \
-    --redcap_csv_path [path to RedCap CSV] \
-    --audio_dir_path  [path to Wasabi export directory] \
-    --bids_dir_path [desired path to BIDS output] \
-    --tar_file_path [desired output path for .tar file]
+```sh
+b2aiprep-cli prepsummerdata \
+   [path to RedCap CSV] \
+   [path to Wasabi export directory] \
+   [desired path to BIDS output] \
+   [desired output path for .tar file]
 ```
 

src/b2aiprep/cli.py

@@ -14,6 +14,7 @@
 from b2aiprep.prepare import (
     redcap_to_bids,
 )
+from b2aiprep.summer_school_data import prepare_summer_school_data
 from b2aiprep.process import (
     Audio,
     SpeechToText,
@@ -55,6 +56,26 @@ def redcap2bids(
         audiodir=audiodir,
     )
 
+
+@main.command()
+@click.argument("redcap_csv_path", type=click.Path(exists=True))
+@click.argument("audio_dir_path", type=click.Path(exists=True))
+@click.argument("bids_dir_path", type=click.Path())
+@click.argument("tar_file_path", type=click.Path())
+def prepsummerdata(
+    redcap_csv_path, 
+    audio_dir_path, 
+    bids_dir_path, 
+    tar_file_path
+):
+    prepare_summer_school_data(
+        redcap_csv_path=Path(redcap_csv_path),
+        audio_dir_path=Path(audio_dir_path),
+        bids_dir_path=Path(bids_dir_path),
+        tar_file_path=Path(tar_file_path)
+    )
+
+
 @main.command()
 @click.argument("filename", type=click.Path(exists=True))
 @click.option("-s", "--subject", type=str, default=None)