VoxelMorph-MRI-Registration-Study

VoxelMorph model for performing 3D medical image registration

Medical image registration for MRI

This code was tested with 3D MRI brain volumes.

Training

1. setup.py
2. make_list_us.py (train_list_3d.txt 생성)
3. train.py

python3 setup.py 
python3 make_list_us.py 
python3 ./scripts/tf/train.py --img-list ./train_list_3d.txt --model-dir ./model/outputs

[gpu--version]
python3 ./scripts/tf/train.py --img-list ./train_list_3d.txt --model-dir ./model/outputs --gpu 1

Inference

python3 inference.py

Dataset

Neurite OASIS Sample Data for Training
MRI Sample Data for Inference

References

https://github.com/voxelmorph/voxelmorph

@article{Balakrishnan_2019,
  author = {Guha Balakrishnan and Amy Zhao and Mert R. Sabuncu and John Guttag and Adrian V. Dalca},
  title = {{VoxelMorph}: A Learning Framework for Deformable Medical Image Registration},
  journal = {{IEEE} Transactions on Medical Imaging},
  year = 2019,
  volume = 38,
  number = 8,
  pages = {1788--180},
  publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
  doi = {10.1109/tmi.2019.2897538},
  url = {https://doi.org/10.1109/tmi.2019.2897538},
}