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[WIP] Numba accelerated alpha filtrations #23

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[WIP] Numba accelerated alpha filtrations #23

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Commits on Nov 3, 2020

  1. First njit attempt

    @ulupo
    ulupo committed Nov 3, 2020
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  2. Fix errors, use nopython=False

    @ulupo
    ulupo committed Nov 3, 2020
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Commits on Nov 4, 2020

  1. Some code cleanup

    @ulupo
    ulupo committed Nov 4, 2020
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  2. Fix np.min to min

    @ulupo
    ulupo committed Nov 4, 2020
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  3. Use contiguous arrays and @ operator

    @ulupo
    ulupo committed Nov 4, 2020
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  4. Simplify if-else

    @ulupo
    ulupo committed Nov 4, 2020
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  5. Improve comments, use more idiomatic slicing

    @ulupo
    ulupo committed Nov 4, 2020
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  6. Remove else as it always needs to be executed, offer alternative in c… 

    …omments
    @ulupo
    ulupo committed Nov 4, 2020
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Commits on Jan 25, 2021

  1. Merge branch 'master' into numba_accelerated_alpha

    @ulupo
    ulupo committed Jan 25, 2021
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  2. First stab using Miroslav Fiedler's method for determining the circum… 

    …sphere
    @ulupo
    ulupo committed Jan 25, 2021
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  3. Fix function name

    @ulupo
    ulupo committed Jan 25, 2021
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  4. Remove numba decorator

    @ulupo
    ulupo committed Jan 25, 2021
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  5. Fix indexing error

    @ulupo
    ulupo committed Jan 25, 2021
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  6. Use dict comprehension

    @ulupo
    ulupo committed Jan 25, 2021
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  7. Make special loop for 1d simplices

    @ulupo
    ulupo committed Jan 25, 2021
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Commits on Jan 26, 2021

  1. Change to a dimension-by-dimension approach to enumerate simplices mi… 

    …nimally
    @ulupo
    ulupo committed Jan 26, 2021
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  2. Use cdist instead of pdist for performance

    @ulupo
    ulupo committed Jan 26, 2021
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  3. Use numba for pairwise distances

    @ulupo
    ulupo committed Jan 26, 2021
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  4. Optimize numba function

    @ulupo
    ulupo committed Jan 26, 2021
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  5. Fix error

    @ulupo
    ulupo committed Jan 26, 2021
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  6. Add convert to float step

    @ulupo
    ulupo committed Jan 26, 2021
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  7. Remove unused MIN_DET variable

    @ulupo
    ulupo committed Jan 26, 2021
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  8. Remove itertools import

    @ulupo
    ulupo committed Jan 26, 2021
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Commits on Jan 27, 2021

  1. Add numba requirement in setup.py

    @ulupo
    ulupo committed Jan 27, 2021
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  2. Minor improvements

    @ulupo
    ulupo committed Jan 27, 2021
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  3. Add idea folder to gitignore

    @ulupo
    ulupo committed Jan 27, 2021
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Commits on Jan 28, 2021

  1. Fully njitted version

    @ulupo
    ulupo committed Jan 28, 2021
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  2. Remove unused imports

    @ulupo
    ulupo committed Jan 28, 2021
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Commits on Feb 1, 2021

  1. Avoid populating TypedDicts in python code by using "unsafe" numba fe… 

    …atures
    @ulupo
    ulupo committed Feb 1, 2021
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Commits on Feb 3, 2021

  1. Fix small mistake in populating simplices_

    @ulupo
    ulupo committed Feb 3, 2021
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Commits on Apr 22, 2021

  1. Attempt to numerically control using condition numbers

    @ulupo
    ulupo committed Apr 22, 2021
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  2. Linting

    @ulupo
    ulupo committed Apr 22, 2021
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