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Add more collection_type specifiers #55

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Feb 1, 2024
Merged

Add more collection_type specifiers #55

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26 changes: 13 additions & 13 deletions tools/suite_qiime2_core__tools/qiime2_core__tools__import.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -358,7 +358,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FrictionlessCSVFileFormat. See the documentation below for more information. Elements must match regex: .+\.csv"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FrictionlessCSVFileFormat. See the documentation below for more information. Elements must match regex: .+\.csv"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -939,7 +939,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1001,7 +1001,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1056,7 +1056,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1095,7 +1095,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1178,7 +1178,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1233,7 +1233,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1313,7 +1313,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1344,7 +1344,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1375,7 +1375,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1430,7 +1430,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1469,7 +1469,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down Expand Up @@ -1522,7 +1522,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand Down
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