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add test showing error during import job preparion with latest Galaxy #51
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Commits on Jan 22, 2024
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add test showing error during import job preparion
the following Traceback can be found in the logs (the test itself is not executed) ``` Traceback (most recent call last): File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/jobs/runners/__init__.py", line 291, in prepare_job job_wrapper.prepare() File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/jobs/__init__.py", line 1254, in prepare ) = tool_evaluator.build() File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/tools/evaluation.py", line 566, in build global_tool_logs(self._build_config_files, config_file, "Building Config Files") File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/tools/evaluation.py", line 96, in global_tool_logs raise e File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/tools/evaluation.py", line 92, in global_tool_logs return func() File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/tools/evaluation.py", line 633, in _build_config_files self.__write_workdir_file(config_filename, config_text, param_dict, is_template=is_template) File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/tools/evaluation.py", line 756, in __write_workdir_file value = fill_template(content, context=context, python_template_version=self.tool.python_template_version) File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/util/template.py", line 143, in fill_template raise first_exception or e File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/util/template.py", line 87, in fill_template return unicodify(t, log_exception=False) File "/tmp/tmpiottroee/galaxy-dev/lib/galaxy/util/__init__.py", line 1153, in unicodify value = str(value) File "/home/berntm/.planemo/gx_venv_3/lib/python3.10/site-packages/Cheetah/Template.py", line 1053, in __unicode__ return getattr(self, mainMethName)() File "cheetah_DynamicallyCompiledCheetahTemplate_1705952649_1165519_57877.py", line 119, in respond File "cheetah_DynamicallyCompiledCheetahTemplate_1705952649_1165519_57877.py", line 102, in stringify File "cheetah_DynamicallyCompiledCheetahTemplate_1705952649_1165519_57877.py", line 113, in stringify AttributeError: 'TreeDict' object has no attribute 'is_collection' ```
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Commits on Jan 23, 2024
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Commits on Jan 24, 2024
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Commits on Jan 26, 2024
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Revert "hack showing that staging_path_and_source_path"
This reverts commit 87b8fb1.
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