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set input formats
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@bernt-matthias
bernt-matthias committed Mar 7, 2024
1 parent 2606884 commit 6daca58
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions tools/suite_qiime2_core__tools/qiime2_core__tools__import.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -939,7 +939,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" format="fastqsanger.gz" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand All @@ -956,7 +956,7 @@ write(json.dumps(inputs))
<param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_R[12]_001\.fastq\.gz">
<validator type="regex" message="This filename doesn't match the regex.">.+_.+_R[12]_001\.fastq\.gz</validator>
</param>
<param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/>
<param name="data" type="data" format="fastqsanger.gz" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/>
</repeat>
</when>
</conditional>
Expand Down Expand Up @@ -1147,7 +1147,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" format="fastqsanger.gz" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand All @@ -1164,7 +1164,7 @@ write(json.dumps(inputs))
<param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_R[12]_001\.fastq\.gz">
<validator type="regex" message="This filename doesn't match the regex.">.+_.+_R[12]_001\.fastq\.gz</validator>
</param>
<param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/>
<param name="data" type="data" format="fastqsanger.gz" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/>
</repeat>
</when>
</conditional>
Expand Down Expand Up @@ -1313,7 +1313,7 @@ write(json.dumps(inputs))
<option value="individual">Associate individual files</option>
</param>
<when value="collection">
<param name="elements" type="data_collection" collection_type="list" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<param name="elements" type="data_collection" collection_type="list" format="fastqsanger.gz" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/>
<conditional name="__q2galaxy__GUI__cond__add_ext__">
<param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one.">
<option value="no">No, use element identifiers as is</option>
Expand All @@ -1330,7 +1330,7 @@ write(json.dumps(inputs))
<param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_R[12]_001\.fastq\.gz">
<validator type="regex" message="This filename doesn't match the regex.">.+_.+_R[12]_001\.fastq\.gz</validator>
</param>
<param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/>
<param name="data" type="data" format="fastqsanger.gz" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/>
</repeat>
</when>
</conditional>
Expand Down

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