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@@ -69,7 +69,7 @@ USAGE-BEGIN | |
--> | ||
``` | ||
Program: prophasm (a greedy assembler for k-mer set compression) | ||
Version: 0.1.0 | ||
Version: 0.1.1 | ||
Contact: Karel Brinda <[email protected]> | ||
Usage: prophasm [options] | ||
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@@ -92,7 +92,6 @@ Command-line parameters: | |
Note that '-' can be used for standard input/output. | ||
``` | ||
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||
<!--- | ||
USAGE-END | ||
--> | ||
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@@ -115,7 +114,7 @@ def extend_simplitig_forward (K, simplitig): | |
S.remove (reverse_complement (kmer)) | ||
break | ||
return S, s | ||
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def get_maximal_simplitig (K, initial_kmer): | ||
simplitig = initial_kmer | ||
K.remove (initial_kmer) | ||
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@@ -124,7 +123,7 @@ def get_maximal_simplitig (K, initial_kmer): | |
simplitig = reverse_completent (simplitig) | ||
K, simplitig = extend_simplitig_forward (K, simplitig) | ||
return K, simplitig | ||
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||
def compute_simplitigs (kmers): | ||
K = set() | ||
for kmer in kmers: | ||
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@@ -1,2 +1,2 @@ | ||
#define VERSION "0.1.0" | ||
#define VERSION "0.1.1" | ||
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