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these notebooks are designed to be run from a beefy (32GB memory) node on a HPC cluster with a SLURM scheduler.

TODO: dask config files

Name		Name	Last commit message	Last commit date
Latest commit History 209 Commits
00_collect.ipynb		00_collect.ipynb
01_make_states.ipynb		01_make_states.ipynb
02_design_and_filter.ipynb		02_design_and_filter.ipynb
03_enumerate_loops.ipynb		03_enumerate_loops.ipynb
04_pack_staple_pair.ipynb		04_pack_staple_pair.ipynb
05_two_state.ipynb		05_two_state.ipynb
06_cleanup_linkres.ipynb		06_cleanup_linkres.ipynb
07_predict_af2_and_order.ipynb		07_predict_af2_and_order.ipynb
README.md		README.md
msd.py		msd.py
predict_.py		predict_.py

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