Daily build #46

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Daily build

	defaults:
	run:
	shell: bash -l {0}

	on:
	schedule:
	- cron: "09 10 * * *"


	jobs:
	build:

	runs-on: "ubuntu-latest"

	steps:
	- uses: actions/checkout@v4
	- uses: mamba-org/setup-micromamba@v1
	# - uses: mamba-org/provision-with-micromamba@v15
	env:
	ACTIONS_ALLOW_UNSECURE_COMMANDS: true
	with:
	micromamba-version: '1.4.5-0'
	environment-name: foo
	create-args: nctoolkit cmocean cartopy pandoc python=3.11 rpy2 r-base r-tidyverse r-ggtext jupyter-book r-mapdata
	init-shell: >-
	bash
	powershell
	cache-environment: true
	post-cleanup: 'all'
	- name: Install dependencies
	shell: bash -l {0}
	run: \|

	sudo apt-get install texlive
	mamba install pandoc r-ggthemes r-ggridges r-maps r-plotrix r-arrow r-pyarrow r-cowplot -y
	python -m pip install .
	pip install PyPDF2
	pip install pyarrow
	pip install rioxarray
	pip install pytest
	pip install textract
	pip install pytest-cov
	pip install coverage

	- name: Test with pytest
	shell: bash -l {0}
	run: \|
	coverage run -m pytest tests/test*.py
	coverage report
	coverage xml

	- name: Upload Coverage to Codecov
	uses: codecov/[email protected]
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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