Merge remote-tracking branch 'upstream/hotfixes' into release

Dockerfile

@@ -13,7 +13,9 @@ RUN apt-get -y install libtool flex bison pkg-config g++ libssl-dev automake
 RUN apt-get -y install libjemalloc-dev libboost-dev libboost-filesystem-dev libboost-system-dev libboost-regex-dev python3-dev autoconf flex bison cmake
 RUN apt-get -y install libxml2-dev libxslt-dev libfreetype6-dev libsuitesparse-dev
 RUN pip install -U wheel six pytest
-RUN pip install colorama==0.4.6 contourpy==1.2.1 cycler==0.12.1 deprecation==2.1.0 fonttools==4.50.0 graphviz==0.20.3 intervaltree==3.1.0 kiwisolver==1.4.5 lxml==5.2.1 matplotlib==3.8.4 networkx==3.2.1 numpy==1.26.4 packaging==24.0 pandas==2.2.1 pillow==10.3.0 pydotplus==2.0.2 pyparsing==3.1.2 python-dateutil==2.9.0.post0 pytz==2024.1 scipy==1.13.0 six==1.16.0 sortedcontainers==2.4.0 tqdm==4.66.2 tzdata==2024.1
+RUN pip install -U meson-python>=0.13.1 Cython>=3.0.6 ninja spin==0.8 build
+RUN pip install deprecation==2.1.0 graphviz==0.20.3 intervaltree==3.1.0 networkx==3.3 packaging==24.0 python-dateutil==2.9.0.post0 pytz==2024.1 six==1.16.0 sortedcontainers==2.4.0 tzdata==2024.1 
+RUN pip install colorama==0.4.6 contourpy==1.2.1 cycler==0.12.1 fonttools==4.51.0 kiwisolver==1.4.5 lxml==5.2.1 matplotlib==3.8.4 numpy==1.26.4 pandas==2.2.2 pillow==10.3.0 pydotplus==2.0.2 pyparsing==3.1.2 scipy==1.13.0 tqdm==4.66.2 
 
 COPY . /app
 RUN cd /app && python setup.py install