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Releases: panoptes-organization/panoptes

Release 0.2.3

07 Aug 15:44
@fgypas fgypas
v0.2.3
91b8386
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Release 0.2.3 Latest
Latest

What's Changed

New Contributors

Full Changelog: v0.2.2...v0.2.3

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kinow and fgypas
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Release 0.2.2

03 Aug 14:11
@fgypas fgypas
v0.2.2
ee6d086
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Release 0.2.2

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Full Changelog: v0.2.1...v0.2.2

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fgypas
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Release 0.2.1

03 Aug 12:26
@fgypas fgypas
v0.2.1
6d46480
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Release 0.2.1

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ryneches and fgypas
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v0.2.0

13 Jan 19:42
@fgypas fgypas
v0.2.0
9b5c0e0
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Version 0.1.1

04 Nov 21:31
@agardelakos agardelakos
v0.1.1
b5add3e
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Version 0.1.1

Fix requirements, PEP8 refactoring, remove unused code

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v0.1: Release 0.1 (#85)

28 Oct 22:04
@gkostoulas gkostoulas
v0.1
06247c0
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v0.1: Release 0.1 (#85) 
* Add gitter button

* Fixes #23 issue with errors in js libraries (#26)

* First implementation of panoptes api

* Added workflow jobs in db

* added api for jobs

* Error fixes

* Fixed inconsistency in jobs api

* feature/31_UI initial commit

* Minor fix

* typo and db update fixes

* Final fix

* feature/31_UI about page

* added job id and hiden db id

* Change in model job primary key

* feature/31_UI contribute

* Feature/add api to panoptes (#34)

* First implementation of panoptes api

* Added workflow jobs in db

* added api for jobs

* Error fixes

* Fixed inconsistency in jobs api

* Minor fix

* typo and db update fixes

* Final fix

* added job id and hiden db id

* Change in model job primary key

* Removes unused messages

* Change the filter for job query

* feature/31_UI added jobs

* First implementation of panoptes api

* Added workflow jobs in db

* feature/31_UI initial commit

* feature/31_UI about page

* feature/31_UI contribute

* feature/31_UI added jobs

* feature/31_UI job html

* Feature/update status (#37)

* Fix issue with progress bar. Update status of jobs to done.

* Added job status in workflow table

* Fix issue with steps in workflows.html and workflow.html

* Feature/7 setup (#38)

* feature/7_setup

* feature/7_setup removed comment

* feature/7_setup PR comment

* Feature/29 ci cd (#40)

* feature/29 travis initial commit

* feature/29_ci_cd test commit to trigger build

* feature/29_ci_cd fixed yml

* feature/29 added README link to travis (#41)

* Added badges for status in jobs (#39)

* Added badges for status in jobs

* Changes in the landing page

* Added check for null values in workflow job size

* Removed button

* Added formater for datetime

* Changes templates to use datetime formater

* Feature/43 add jobs start and end time (#44)

* Added start and and date to db

* added init values for jobs

* Visual improvements and duration meta

* Added library for time parse to requirements

* Feature/dockerfile (#45)

* Add Dockerfile. Add docker-compose. Add run.py to start easier the application.

* Update Dockerfile and run.py

* The correct way is docker run -p 8000:1234 -it <container id>

* Update Dockerfile, docker-compose.yaml and change run.py to panoptes.py

* COPY instead of cloning the repo

* Update README.md with docker-compose instructions

* Update README.md

* Update docker info in README.md

* Update README.md

* Removed variables from Dockerfile

* changed icons (#47)

* Wrong page handle (#49)

* Wring page handle

* more 404 forms

* Update issue templates (#52)

* Update issue templates

* Update issue template

* Update video with biohackathon features. (#58)

* Feature/docker to travis (#60)

* initial commit

* adding api test

* try2

* WIP

* feature/docket_to_travis: changes function name to conform to pytest rules

* docker_to_travis: fixed .travis.yml

* docker_to_travis: proper name of the test class

* docker_to_travis: removed useless code

* Update properly job and workflow status to Error when a job or workflow fails. (#65)

* Add no execution status in workflows where results is already there. closes #42 (#66)

* Add service-info endpoint in the API (#67)

closes #64

* Bump lodash from 4.17.14 to 4.17.19 in /server/static (#71)

Bumps [lodash](https://github.com/lodash/lodash) from 4.17.14 to 4.17.19.
- [Release notes](https://github.com/lodash/lodash/releases)
- [Commits](https://github.com/lodash/lodash/compare/4.17.14...4.17.19)

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump jquery from 3.4.1 to 3.5.0 in /server/static (#70)

Bumps [jquery](https://github.com/jquery/jquery) from 3.4.1 to 3.5.0.
- [Release notes](https://github.com/jquery/jquery/releases)
- [Commits](https://github.com/jquery/jquery/compare/3.4.1...3.5.0)

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Feature/arg parse (#72)

* Add argparse in panoptes.py

* Clean up argparse. Change default database path to .panoptes.db

* Add exec mode in two scripts. Minor README.md update.

* Clean up codebase (#74)

- Remove unused html files and js libraries (mainly from core-ui)
- Slim Dockerfile
- Remove developer instructions from README.md
- Remove all npm and node dependencies
- Improve the appearance of some html files (index.html and workflow.html)

Fixes #48

* Update tests in .travis.yml (#75)

- Install conda (with mamba support)
- Start panoptes server with docker-compose (as before)
- Install snakemake with wms-monitor option (conda env: snakemake_develop)
- Run example workflow that populates the database
- Add tests to test the panoptes API (virtualenv: venv_test)

Fixes #61

* Update travis CI tests to use latest snakemake version (#77)

Update travis CI to use latest snakemake version. Fixes #76

* Feature/46 create pypi package (#84)

* WIP: => in requirements, gitignore and setup.py modifications

* renamed folder server into panoptes

* changed references from server to panoptes

* removed duplicate file

* moved tests folder inside panoptes

* added MANIFEST for html files

* changed panoptes.py directory in order the keyword panoptes to work after the pip install panoptes command

* updated readme & docker-compose

* typo readme

* Fix MANIFEST.in (#78)

* feature/46: updated README

* Fix docker compose

* fixed tests path

* fix in travis.yml

* fix in travis

Co-authored-by: Foivos Gypas <[email protected]>
Co-authored-by: fgypas <[email protected]>

* fix README

Co-authored-by: fgypas <[email protected]>
Co-authored-by: Foivos Gypas <[email protected]>
Co-authored-by: Giorgos Kostoulas <[email protected]>
Co-authored-by: gkostoulas <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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