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Add test with conda/pip and service-info endpoint
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fgypas committed Aug 4, 2023
1 parent ae6d153 commit c0194ea
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35 changes: 35 additions & 0 deletions .github/workflows/python-package-conda-pip.yml
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name: Python Package using Conda

on: [push]

jobs:
build-linux:
runs-on: ubuntu-latest
strategy:
max-parallel: 5

steps:
- uses: actions/checkout@v3
- name: Set up Python 3.10
uses: actions/setup-python@v3
with:
python-version: '3.10'
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda install -c conda-forge -c bioconda snakemake pip
pip install .
- name: Test panoptes
run: |
panoptes
response=$(curl http://127.0.0.1:5000/api/service-info)
if [ "$response" = "{\"status\":\"running\"}" ]; then
echo "Success";
exit 0;
else
echo "Fail";
exit 1;
fi

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