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    37 repositories

    • igv

      Public
      Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
      Java
      •
      MIT License
      •387•645•156•2•Updated Nov 15, 2024Nov 15, 2024

    • spacewalk

      Public
      Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
      JavaScript
      •
      MIT License
      •1•10•1•0•Updated Nov 14, 2024Nov 14, 2024

    • igv.js

      Public
      Embeddable genomic visualization component based on the Integrative Genomics Viewer
      HTML
      •
      MIT License
      •230•644•68•2•Updated Nov 11, 2024Nov 11, 2024

    • juicebox-web

      Public
      JavaScript
      •0•2•3•0•Updated Nov 7, 2024Nov 7, 2024

    • juicebox.js

      Public
      HiC contact matrix visualization
      JavaScript
      •
      MIT License
      •13•19•21•0•Updated Nov 7, 2024Nov 7, 2024

    • igv-webapp

      Public
      IGV Web App
      JavaScript
      •
      MIT License
      •44•117•6•0•Updated Nov 7, 2024Nov 7, 2024

    • igv.js-docs

      Public
      JavaScript
      •2•0•2•1•Updated Nov 1, 2024Nov 1, 2024

    • igv-notebook

      Public
      Module for embedding igv.js in an IPython notebook
      JavaScript
      •
      MIT License
      •14•66•4•0•Updated Oct 25, 2024Oct 25, 2024

    • igv-docs

      Public
      Markdown-based documentation website - IGV desktop application
      JavaScript
      •1•5•1•0•Updated Oct 3, 2024Oct 3, 2024

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      TypeScript
      •
      MIT License
      •9•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • igv-reports

      Public
      Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
      Python
      •
      MIT License
      •52•349•2•0•Updated Sep 18, 2024Sep 18, 2024

    • igv.js-flask

      Public
      Example project for integrating igv.js and flask
      Python
      •
      MIT License
      •15•26•1•1•Updated Sep 17, 2024Sep 17, 2024

    • data-modal

      Public
      A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.
      JavaScript
      •
      MIT License
      •2•2•0•0•Updated Aug 10, 2024Aug 10, 2024

    • igv-webapp-docs

      Public
      JavaScript
      •0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • igv-utils

      Public
      JavaScript
      •5•5•2•0•Updated Jul 17, 2024Jul 17, 2024

    • hic-straw

      Public
      Command line and web utilities for reading .hic contact matrix files
      JavaScript
      •
      MIT License
      •4•8•0•0•Updated Jul 9, 2024Jul 9, 2024

    • igv-ui

      Public
      UI components for igv.js and related projects
      JavaScript
      •
      MIT License
      •3•1•1•0•Updated Feb 29, 2024Feb 29, 2024

    • igv-widgets

      Public
      UI widgets for igvteam applications
      JavaScript
      •3•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • juicebox-notebook

      Public
      JavaScript
      •
      MIT License
      •0•2•0•0•Updated Sep 16, 2023Sep 16, 2023

    • circular-view-app

      Public
      JavaScript
      •1•0•0•3•Updated Aug 3, 2023Aug 3, 2023

    • circular-view

      Public
      Wrapper class for JBrowse genomic circular view component
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Apr 27, 2023Apr 27, 2023

    • shoebox

      Public
      JavaScript
      •
      MIT License
      •0•0•2•0•Updated Apr 8, 2023Apr 8, 2023

    • google-utils

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2023Apr 1, 2023

    • igv.js-react

      Public
      Example project for using igv.js with React
      JavaScript
      •0•2•0•0•Updated Mar 27, 2023Mar 27, 2023

    • bgzip

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

    • extractome

      Public
      Creates an "extracted" genome assembly from a fasta + list of regions
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 6, 2023Jan 6, 2023

    • swcproject

      Public
      SpaceWalk CLI tool to convert legacy point-cloud and ensemble files to .sw format
      JavaScript
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • igv-juicebox

      Public
      Prototypes exploring potential igv.js <-> juicebox.js interactions.
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 3, 2022Aug 3, 2022

    • igv-electron

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Oct 27, 2021Oct 27, 2021

    • d4server

      Public
      Prototype D4 server
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 15, 2021Sep 15, 2021