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@hdr-bgnn Biology Guided Neural Networks

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    17 repositories

    • Minnow_Segmented_Traits

      Public
      Using trait segmentation to understand minnow trait evolution across an ecological gradient
      R
      •
      MIT License
      •3•1•9•0•Updated Apr 22, 2024Apr 22, 2024

    • Crop_image

      Public
      Small repository to store the cropping step of the BGNN Fish project
      Python
      •
      MIT License
      •1•0•3•0•Updated Nov 22, 2023Nov 22, 2023

    • drexel_metadata_formatter

      Public
      Reformats the metadata output file from drexel_metadata repo
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • drexel_metadata

      Public
      TeX
      •
      MIT License
      •3•0•2•0•Updated Nov 22, 2023Nov 22, 2023

    • BGNN-trait-segmentation

      Public
      Jupyter Notebook
      •
      MIT License
      •2•3•2•0•Updated Nov 22, 2023Nov 22, 2023

    • Morphology-analysis

      Public
      Extract morphological characteristics from trait segmented fish
      Jupyter Notebook
      •
      MIT License
      •2•1•5•0•Updated Nov 22, 2023Nov 22, 2023

    • BGNN_Core_Workflow

      Public
      First complet version of the workflow with snakemake
      Shell
      •
      MIT License
      •2•0•6•0•Updated Nov 20, 2023Nov 20, 2023

    • iqm

      Public
      source code for "Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species
      Jupyter Notebook
      •0•0•0•0•Updated Oct 15, 2022Oct 15, 2022

    • traits_tool

      Public
      Tool to extract traits from segmented images
      Python
      •
      MIT License
      •1•0•0•0•Updated May 26, 2022May 26, 2022

    • Start_with_OSC

      Public
      This repo intends to collect the information to start with Ohio Supercomputing Centre
      0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • fishsnake

      Public
      Python
      •0•0•0•0•Updated Jan 6, 2022Jan 6, 2022

    • myhelpers

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 28, 2020Jul 28, 2020

    • bgnn_related

      Public
      Python
      •5•0•0•0•Updated May 7, 2020May 7, 2020

    • SlicerDockers

      Public
      docker config files for slicer
      HTML
      •
      Other
      •27•0•0•0•Updated May 4, 2020May 4, 2020

    • bgnn.org

      Public
      the bgnn website
      CSS
      •0•0•0•0•Updated Apr 3, 2020Apr 3, 2020

    • ml_fish_seg

      Public
      r script that uses ml to segment fish/ label/ ruler in a single image into 3 separate images
      R
      •4•0•0•0•Updated Mar 2, 2020Mar 2, 2020

    • inhs

      Public
      inhs related stuff
      0•0•0•0•Updated Feb 16, 2020Feb 16, 2020