Repositories list

• bioassayR

  Public
  Cross-target analysis of small molecule bioactivity - This is the official development repository

  R

  •2•5•0•0•Updated Oct 22, 2024Oct 22, 2024

• ChemmineR

  Public
  Cheminformatics Toolkit for R

  R

  •9•13•1•0•Updated Sep 26, 2024Sep 26, 2024

• ChemmineOB

  Public
  OpenBabel wrapper package for R

  C++

  •

  Other

  •5•10•3•2•Updated Aug 2, 2024Aug 2, 2024

• signatureSearch

  Public
  R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization

  R

  •4•17•1•0•Updated Feb 16, 2024Feb 16, 2024

• drugTargetInteractions

  Public
  R

  •0•1•0•0•Updated Oct 31, 2023Oct 31, 2023

• eiR

  Public
  Accelerated similarity searching of small molecules (bioconductor package)

  R

  •

  Other

  •0•3•2•0•Updated Apr 14, 2023Apr 14, 2023

• chemminetools-docs

  Public
  SCSS

  •

  MIT License

  •0•0•0•4•Updated Apr 11, 2023Apr 11, 2023

• signatureSearchData

  Public
  Reference datasets used by the associated signatureSearch software package

  R

  •2•5•0•0•Updated Apr 5, 2023Apr 5, 2023

• chemminetools

  Public
  ChemMine Tools: open source web framework for small molecule analysis

  JavaScript

  •

  Other

  •17•36•37•5•Updated Dec 8, 2022Dec 8, 2022

• customCMPdb

  Public
  Query and customization interface for compound annotation database from DrugAge, DrugBank, CMAP02 and LINCS databases. It also stores the structure SDF datasets for compounds in the above four databases.

  R

  •0•2•0•0•Updated Feb 1, 2022Feb 1, 2022

• drugbankR

  Public
  R package for querying the DrugBank database in batch locally

  R

  •8•32•0•0•Updated Jul 30, 2021Jul 30, 2021

• GCD

  Public
  The Genome Cluster Database

  Java

  •0•0•0•1•Updated Jun 17, 2021Jun 17, 2021

• test-tgirke

  Public
  test-tgirke created by GitHub Classroom

  0•0•0•0•Updated Jan 30, 2021Jan 30, 2021

• subHmmWeb

  Public
  Sub-HMM data and tools

  Java

  •0•0•0•1•Updated Jun 15, 2020Jun 15, 2020

• cellwall

  Public
  Cell Wall Navigator (CWN)

  Perl

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Apr 24, 2020Apr 24, 2020

• cybersam

  Public
  Development of a Genome-Scale Cell Type-Specific Gene Expression Map

  0•0•0•0•Updated Apr 21, 2020Apr 21, 2020

• drugs

  Public
  Compound databases for use with ChemmineR

  R

  •2•1•0•0•Updated Mar 19, 2018Mar 19, 2018

• targetSelectivity

  Public
  Code to supplement "Large-scale bioactivity analysis of the small-molecule assayed proteome"

  R

  •

  Other

  •1•2•0•0•Updated Feb 16, 2017Feb 16, 2017

• fmcsR

  Public
  Mismatch Tolerant Maximum Common Substructure Searching

  C++

  •0•5•0•0•Updated Jan 4, 2016Jan 4, 2016

• ChemmineR-git-svn-bridge

  Public
  This is defunct, now replaced with https://github.com/girke-lab/ChemmineR

  R

  •6•2•4•0•Updated Jan 4, 2016Jan 4, 2016

• eiR-release

  Public
  bioconductor version 3.1

  C

  •

  Other

  •0•0•0•0•Updated Jan 3, 2016Jan 3, 2016

• ChemmineR-release

  Public
  bioconductor version 3.1

  R

  •0•0•0•0•Updated Jan 1, 2016Jan 1, 2016

• ChemmineOB-release

  Public
  bioconductor 2.14

  C++

  •

  Other

  •0•0•0•0•Updated Aug 6, 2014Aug 6, 2014

• fmcsR-release

  Public
  bioconductor version 2.14

  C++

  •0•0•0•0•Updated Aug 6, 2014Aug 6, 2014

• chemmine-ei

  Public
  C

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 25, 2013Mar 25, 2013