FM2-130:Adding support for the FHIR Media resource #328
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,30 @@ | ||
| /* | ||
| * This Source Code Form is subject to the terms of the Mozilla Public License, | ||
| * v. 2.0. If a copy of the MPL was not distributed with this file, You can | ||
| * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under | ||
| * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. | ||
| * | ||
| * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS | ||
| * graphic logo is a trademark of OpenMRS Inc. | ||
| */ | ||
| package org.openmrs.module.fhir2.api; | ||
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| import java.util.HashSet; | ||
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| import ca.uhn.fhir.model.api.Include; | ||
| import ca.uhn.fhir.rest.api.SortSpec; | ||
| import ca.uhn.fhir.rest.api.server.IBundleProvider; | ||
| import ca.uhn.fhir.rest.param.DateRangeParam; | ||
| import ca.uhn.fhir.rest.param.ReferenceAndListParam; | ||
| import ca.uhn.fhir.rest.param.StringAndListParam; | ||
| import ca.uhn.fhir.rest.param.TokenAndListParam; | ||
| import org.hl7.fhir.r4.model.Media; | ||
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| public interface FhirMediaService extends FhirService<Media> { | ||
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| IBundleProvider searchForMedia(TokenAndListParam status, TokenAndListParam type, ReferenceAndListParam subject, | ||
| ReferenceAndListParam encounterReference, DateRangeParam createdDateTime, TokenAndListParam contentType, | ||
| TokenAndListParam id, StringAndListParam contentDataType, StringAndListParam contentTitle, | ||
| DateRangeParam contentCreated, DateRangeParam lastUpdated, HashSet<Include> includes, | ||
| HashSet<Include> revIncludes, SortSpec sort); | ||
| } |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,39 @@ | ||
| /* | ||
| * This Source Code Form is subject to the terms of the Mozilla Public License, | ||
| * v. 2.0. If a copy of the MPL was not distributed with this file, You can | ||
| * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under | ||
| * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. | ||
| * | ||
| * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS | ||
| * graphic logo is a trademark of OpenMRS Inc. | ||
| */ | ||
| package org.openmrs.module.fhir2.api.dao; | ||
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| import javax.annotation.Nonnull; | ||
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| import java.util.List; | ||
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| import org.openmrs.Obs; | ||
| import org.openmrs.annotation.Authorized; | ||
| import org.openmrs.module.fhir2.api.search.param.SearchParameterMap; | ||
| import org.openmrs.util.PrivilegeConstants; | ||
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| public interface FhirMediaDao extends FhirDao<Obs> { | ||
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| @Override | ||
| @Authorized(PrivilegeConstants.GET_OBS) | ||
| Obs get(@Nonnull String uuid); | ||
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| @Override | ||
| @Authorized(PrivilegeConstants.ADD_OBS) | ||
| Obs createOrUpdate(@Nonnull Obs newEntry); | ||
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| @Override | ||
| @Authorized(PrivilegeConstants.DELETE_OBS) | ||
| Obs delete(@Nonnull String uuid); | ||
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| @Override | ||
| @Authorized(PrivilegeConstants.GET_OBS) | ||
| List<String> getSearchResultUuids(@Nonnull SearchParameterMap theParams); | ||
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| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,119 @@ | ||
| /* | ||
| * This Source Code Form is subject to the terms of the Mozilla Public License, | ||
| * v. 2.0. If a copy of the MPL was not distributed with this file, You can | ||
| * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under | ||
| * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. | ||
| * | ||
| * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS | ||
| * graphic logo is a trademark of OpenMRS Inc. | ||
| */ | ||
| package org.openmrs.module.fhir2.api.dao.impl; | ||
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| import static org.hibernate.criterion.Restrictions.eq; | ||
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| import javax.annotation.Nonnull; | ||
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| import java.util.List; | ||
| import java.util.Optional; | ||
| import java.util.stream.Collectors; | ||
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| import ca.uhn.fhir.rest.param.DateParam; | ||
| import ca.uhn.fhir.rest.param.ReferenceAndListParam; | ||
| import ca.uhn.fhir.rest.param.TokenAndListParam; | ||
| import lombok.AccessLevel; | ||
| import lombok.Setter; | ||
| import org.hibernate.Criteria; | ||
| import org.openmrs.Obs; | ||
| import org.openmrs.api.ObsService; | ||
| import org.openmrs.api.context.Context; | ||
| import org.openmrs.module.fhir2.FhirConstants; | ||
| import org.openmrs.module.fhir2.api.dao.FhirMediaDao; | ||
| import org.openmrs.module.fhir2.api.search.param.SearchParameterMap; | ||
| import org.springframework.beans.factory.annotation.Autowired; | ||
| import org.springframework.stereotype.Component; | ||
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| @Component | ||
| @Setter(AccessLevel.PACKAGE) | ||
| public class FhirMediaDaoImpl extends BaseFhirDao<Obs> implements FhirMediaDao{ | ||
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| private ObsService obsService = Context.getObsService(); | ||
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| @Override | ||
| public Obs get(@Nonnull String uuid) { | ||
| return obsService.getObsByUuid(uuid); | ||
| } | ||
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| @Override | ||
| public Obs createOrUpdate(@Nonnull Obs newEntry) { | ||
| return newEntry; | ||
| } | ||
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| @Override | ||
| public Obs delete(@Nonnull String uuid) { | ||
| return obsService.getObsByUuid(uuid); | ||
| } | ||
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| @Override | ||
| public List<Obs> getSearchResults(@Nonnull SearchParameterMap theParams, @Nonnull List<String> resourceUuids) { | ||
| return resourceUuids.stream().map(obsService::getObsByUuid).collect(Collectors.toList()); | ||
| } | ||
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| @Override | ||
| protected void setupSearchParams(Criteria criteria, SearchParameterMap theParams) { | ||
| theParams.getParameters().forEach(entry -> { | ||
|
There was a problem hiding this comment. Here, we'll want to ensure that we're only searching ComplexObs and not just any Obs. This looks like it could be done as something like: if (lacksAlias(criteria, "c")) {
criteria.createAlias("concept", "c");
}
if (lacksAlias(criteria, "cdt")) {
criteria.createAlias("c.datatype", "cdt");
}
criteria.add(eq("cdt.hl7_abbreviation", "ED")); |
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| switch (entry.getKey()) { | ||
| case FhirConstants.MEDIA_STATUS: | ||
| entry.getValue().forEach(status -> handleStatus(criteria, (TokenAndListParam) status.getParam())); | ||
| break; | ||
| case FhirConstants.MEDIA_TYPE: | ||
| entry.getValue().forEach(type -> handleMediaType(criteria, (TokenAndListParam) type.getParam())); | ||
| break; | ||
| case FhirConstants.MEDIA_SUBJECT: | ||
| entry.getValue() | ||
| .forEach(subject -> handleMediaSubject(criteria, (ReferenceAndListParam) subject.getParam())); | ||
| break; | ||
| case FhirConstants.MEDIA_ENCOUNTER_REFERENCE: | ||
| break; | ||
| case FhirConstants.MEDIA_CREATED_DATE_TIME: | ||
| entry.getValue().forEach( | ||
| createdTime -> handleDate(createdTime.getPropertyName(), (DateParam) createdTime.getParam()) | ||
| .ifPresent(criteria::add)); | ||
| break; | ||
| case FhirConstants.MEDIA_CONTENT_TYPE: | ||
| break; | ||
| case FhirConstants.CONTENT_DATA: | ||
| break; | ||
| case FhirConstants.CONTENT_TITLE: | ||
| break; | ||
| case FhirConstants.CONTENT_DATE_OF_CREATION: | ||
| entry.getValue().forEach(contentDateOfCreation -> handleDate(contentDateOfCreation.getPropertyName(), | ||
| (DateParam) contentDateOfCreation.getParam())); | ||
| break; | ||
| } | ||
| }); | ||
| } | ||
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| private void handleStatus(Criteria criteria, TokenAndListParam status) { | ||
| // handleAndListParam(status, (data) -> propertyLike("status", status)).ifPresent(criteria::add); | ||
| } | ||
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| private void handleMediaType(Criteria criteria, TokenAndListParam mediaType) { | ||
| if (mediaType != null) { | ||
| if (lacksAlias(criteria, "mt")) { | ||
| criteria.createAlias("mediaType", "mt"); | ||
| handleAndListParam(mediaType, (tag) -> Optional.of(eq("mt.type", tag.getValue()))).ifPresent(criteria::add); | ||
| } | ||
| } | ||
| } | ||
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| private void handleMediaSubject(Criteria criteria, ReferenceAndListParam mediaSubject) { | ||
| if (mediaSubject != null) { | ||
| if (lacksAlias(criteria, "ms")) { | ||
| criteria.createAlias("mediaSubject", "ms"); | ||
| handleAndListParam(mediaSubject, (tag) -> Optional.of(eq("ms.subject", tag.getValue()))) | ||
| .ifPresent(criteria::add); | ||
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| } | ||
| } | ||
| } | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,77 @@ | ||
| /* | ||
| * This Source Code Form is subject to the terms of the Mozilla Public License, | ||
| * v. 2.0. If a copy of the MPL was not distributed with this file, You can | ||
| * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under | ||
| * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. | ||
| * | ||
| * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS | ||
| * graphic logo is a trademark of OpenMRS Inc. | ||
| */ | ||
| package org.openmrs.module.fhir2.api.impl; | ||
|
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| import java.util.HashSet; | ||
|
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| import ca.uhn.fhir.model.api.Include; | ||
| import ca.uhn.fhir.rest.api.SortSpec; | ||
| import ca.uhn.fhir.rest.api.server.IBundleProvider; | ||
| import ca.uhn.fhir.rest.param.DateRangeParam; | ||
| import ca.uhn.fhir.rest.param.ReferenceAndListParam; | ||
| import ca.uhn.fhir.rest.param.StringAndListParam; | ||
| import ca.uhn.fhir.rest.param.TokenAndListParam; | ||
| import lombok.AccessLevel; | ||
| import lombok.Getter; | ||
| import lombok.Setter; | ||
| import org.hl7.fhir.r4.model.Media; | ||
| import org.openmrs.Obs; | ||
| import org.openmrs.module.fhir2.FhirConstants; | ||
| import org.openmrs.module.fhir2.api.FhirMediaService; | ||
| import org.openmrs.module.fhir2.api.dao.FhirMediaDao; | ||
| import org.openmrs.module.fhir2.api.search.SearchQuery; | ||
| import org.openmrs.module.fhir2.api.search.SearchQueryInclude; | ||
| import org.openmrs.module.fhir2.api.search.param.SearchParameterMap; | ||
| import org.openmrs.module.fhir2.api.translators.MediaTranslator; | ||
| import org.springframework.beans.factory.annotation.Autowired; | ||
| import org.springframework.stereotype.Component; | ||
| import org.springframework.transaction.annotation.Transactional; | ||
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| @Component | ||
| @Transactional | ||
| @Getter(AccessLevel.PROTECTED) | ||
| @Setter(AccessLevel.MODULE) | ||
| public class FhirMediaServiceImpl extends BaseFhirService<Media, Obs> implements FhirMediaService { | ||
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| @Autowired | ||
| private FhirMediaDao dao; | ||
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| @Autowired | ||
| private MediaTranslator translator; | ||
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| @Autowired | ||
| private SearchQuery<Obs, Media, FhirMediaDao, MediaTranslator, SearchQueryInclude<Media>> searchQuery; | ||
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| @Autowired | ||
| private SearchQueryInclude<Media> searchQueryInclude; | ||
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| @Override | ||
| public IBundleProvider searchForMedia(TokenAndListParam status, TokenAndListParam type, ReferenceAndListParam subject, | ||
| ReferenceAndListParam encounterReference, DateRangeParam createdDateTime, TokenAndListParam contentType, | ||
| TokenAndListParam id, StringAndListParam contentDataType, StringAndListParam contentTitle, | ||
| DateRangeParam contentCreated, DateRangeParam lastUpdated, HashSet<Include> includes, | ||
| HashSet<Include> revIncludes, SortSpec sort) { | ||
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| SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.MEDIA_STATUS, status) | ||
| .addParameter(FhirConstants.MEDIA_TYPE, type).addParameter(FhirConstants.MEDIA_SUBJECT, subject) | ||
| .addParameter(FhirConstants.MEDIA_ENCOUNTER_REFERENCE, encounterReference) | ||
| .addParameter(FhirConstants.MEDIA_CREATED_DATE_TIME, createdDateTime) | ||
| .addParameter(FhirConstants.MEDIA_CONTENT_TYPE, contentType) | ||
| .addParameter(FhirConstants.CONTENT_DATA, contentDataType) | ||
| .addParameter(FhirConstants.CONTENT_TITLE, contentTitle) | ||
| .addParameter(FhirConstants.CONTENT_DATE_OF_CREATION, contentCreated) | ||
| .addParameter(FhirConstants.COMMON_SEARCH_HANDLER, FhirConstants.ID_PROPERTY, id) | ||
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|
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| .addParameter(FhirConstants.COMMON_SEARCH_HANDLER, FhirConstants.LAST_UPDATED_PROPERTY, lastUpdated) | ||
| .addParameter(FhirConstants.COMMON_SEARCH_HANDLER, includes) | ||
| .addParameter(FhirConstants.COMMON_SEARCH_HANDLER, revIncludes).setSortSpec(sort); | ||
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| return searchQuery.getQueryResults(theParams, dao, translator, searchQueryInclude); | ||
| } | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| /* | ||
| * This Source Code Form is subject to the terms of the Mozilla Public License, | ||
| * v. 2.0. If a copy of the MPL was not distributed with this file, You can | ||
| * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under | ||
| * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. | ||
| * | ||
| * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS | ||
| * graphic logo is a trademark of OpenMRS Inc. | ||
| */ | ||
| package org.openmrs.module.fhir2.api.translators; | ||
|
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| import javax.annotation.Nonnull; | ||
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| import org.hl7.fhir.r4.model.Media; | ||
| import org.openmrs.Obs; | ||
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| public interface MediaContentTranslator extends OpenmrsFhirUpdatableTranslator<Obs, Media> { | ||
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| /** | ||
| * Maps an {@link org.openmrs.Obs} to a corresponding {@link org.hl7.fhir.r4.model.Type} | ||
| * | ||
| * @param data the obs data to translate | ||
| * @return the corresponding FHIR base64 encoded version of the data | ||
| */ | ||
| @Override | ||
| Media toFhirResource(@Nonnull Obs data); | ||
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| /** | ||
| * Maps an {@link org.hl7.fhir.r4.model.Type} to a existing {@link org.openmrs.Obs} | ||
| * | ||
| * @param existingObject the obs data to update | ||
| * @param resource the FHIR base64 encoded version of the data to map | ||
| * @return an updated version of the obs data | ||
| */ | ||
| @Override | ||
| Obs toOpenmrsType(@Nonnull Obs existingObject, @Nonnull Media resource); | ||
| } |
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This doesn't seem right to me. Why did you change the example query?