Docker: update rstudio #169

	on:
	push:
	branches:
	- master
	pull_request:
	workflow_dispatch:
	inputs:
	update:
	description: 'Update the R package library'

	name: Build and update package library

	jobs:
	Build:
	strategy:
	fail-fast: false
	matrix:
	os: ['ubuntu-20.04', 'ubuntu-22.04']

	runs-on: ${{ matrix.os }}
	name: ${{ matrix.os }}

	steps:
	- name: Prepare system
	run: \|
	sudo apt-get update
	sudo add-apt-repository -y "ppa:marutter/rrutter4.0"
	sudo apt-get install -y git curl devscripts equivs gdebi-core

	- name: Checkout
	uses: actions/checkout@v3

	- name: Update package library
	if: ${{ github.event.inputs.update }}
	run: \|
	(cd opencpu-lib; rm *.tar.gz; Rscript downloaddeps.R)
	git add opencpu-lib
	git status

	- name: Install build dependencies
	run: \|
	sudo mk-build-deps -i

	- name: Build
	run: \|
	echo "DEBUILD_TGZ_CHECK=no" >> ~/.devscripts
	debuild -us -uc

	- name: Test installing
	run: \|
	sudo gdebi --n ../opencpu-lib_*.deb
	sudo gdebi --n ../opencpu-server_*.deb

	- name: Test server is up
	run: curl -m5 --fail http://localhost/ocpu/info

	- name: Test output formats
	run: \|
	curl -m5 --fail http://localhost/ocpu/library/MASS/data/cats/ndjson
	curl -m5 --fail http://localhost/ocpu/library/MASS/data/cats/arrowipc

	- name: Print server logs
	run: sudo cat /var/log/apache2/error.log

	- name: Commit R package library updates
	if: ${{ github.event.inputs.update && contains(matrix.os, 'ubuntu-22.04') }}
	run: \|
	git config --global user.name 'Jeroen Ooms'
	git config --global user.email '[email protected]'
	git commit -m "Auto update package library"
	git push

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