Merge pull request #636 from arayabrain/develop-main

rm large files from package

pyproject.toml

@@ -29,7 +29,6 @@ include = [
  "frontend/build/static/js/*",
  "frontend/build/static/media/*",
  "studio/app/optinist/core/nwb/nwb.yaml",
- "studio/app/optinist/microscopes/libs.zip",
  "studio/app/common/core/snakemake/snakemake.yaml",
  "studio/app/*/wrappers/**/*.yaml",
  "studio/app/Snakefile",

studio/app/optinist/microscopes/ND2Reader.py

@@ -7,6 +7,7 @@
 from enum import Enum, IntEnum
 
 import numpy as np
+import requests
 
 from studio.app.dir_path import DIRPATH
 from studio.app.optinist.microscopes.MicroscopeDataReaderBase import (
@@ -64,6 +65,12 @@ class ND2Reader(MicroscopeDataReaderBase):
  def unpack_libs():
  """Unpack library files"""
  if not os.path.isdir(DIRPATH.MICROSCOPE_LIB_DIR):
+ if not os.path.exists(DIRPATH.MICROSCOPE_LIB_ZIP):
+ response = requests.get(
+ "https://github.com/oist/optinist/raw/v1.2.1/studio/app/optinist/microscopes/libs.zip" # noqa: E501
+ )
+ with open(DIRPATH.MICROSCOPE_LIB_ZIP, "wb") as f:
+ f.write(response.content)
  shutil.unpack_archive(
  DIRPATH.MICROSCOPE_LIB_ZIP, DIRPATH.MICROSCOPE_LIB_DIR
  )

studio/app/optinist/microscopes/OIRReader.py

@@ -4,6 +4,7 @@
 import shutil
 
 import numpy as np
+import requests
 
 import studio.app.optinist.microscopes.modules.olympus.lib as lib
 from studio.app.dir_path import DIRPATH
@@ -58,6 +59,13 @@ class OIRReader(MicroscopeDataReaderBase):
  def unpack_libs():
  """Unpack library files"""
  if not os.path.isdir(DIRPATH.MICROSCOPE_LIB_DIR):
+ if not os.path.exists(DIRPATH.MICROSCOPE_LIB_ZIP):
+ response = requests.get(
+ "https://github.com/oist/optinist/raw/v1.2.1/studio/app/optinist/microscopes/libs.zip" # noqa: E501
+ )
+ with open(DIRPATH.MICROSCOPE_LIB_ZIP, "wb") as f:
+ f.write(response.content)
+
  shutil.unpack_archive(
  DIRPATH.MICROSCOPE_LIB_ZIP, DIRPATH.MICROSCOPE_LIB_DIR
  )