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Added in auto-generated nipype conversion templates #12

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merged 339 commits into from
Mar 25, 2024
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@tclose tclose commented Mar 22, 2024

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codecov-commenter commented Mar 22, 2024

Codecov Report

Attention: Patch coverage is 31.77966% with 322 lines in your changes are missing coverage. Please review.

Project coverage is 42.53%. Comparing base (8375a9b) to head (cea1315).
Report is 29 commits behind head on main.

Files Patch % Lines
pydra/tasks/freesurfer/v7_4/mri/binarize.py 0.00% 28 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mri/surf2surf.py 0.00% 27 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mri/label2vol.py 0.00% 25 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mri/robust_register.py 0.00% 25 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mri/robust_template.py 0.00% 24 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mris/ca_label.py 0.00% 24 Missing ⚠️
...dra/tasks/freesurfer/v7_4/mris/anatomical_stats.py 0.00% 23 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mris/preproc.py 0.00% 23 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mri/vol2vol.py 0.00% 22 Missing ⚠️
pydra/tasks/freesurfer/v7_4/mris/ca_train.py 0.00% 22 Missing ⚠️
... and 10 more
Additional details and impacted files
@@             Coverage Diff             @@
##             main      #12       +/-   ##
===========================================
- Coverage   55.00%   42.53%   -12.47%     
===========================================
  Files           2       27       +25     
  Lines          20      576      +556     
  Branches        2       54       +52     
===========================================
+ Hits           11      245      +234     
- Misses          7      326      +319     
- Partials        2        5        +3     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

ghisvail and others added 28 commits March 25, 2024 13:17
- output_volume_file -> output_volume
- segmentation_file -> head_segmentation
- Drop use_existing_segmentation, use generate_segmentation=False instead.
- Add docstring to spec classes
- custom_brain_mask_file -> custom_brain_mask
- threads -> num_threads
- Drop _file suffixes in volume arguments
- Simplify callables in output specifications
* NEW: Add task for mri_coreg

* MNT: Add doctest for Coreg
Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 1 to 2.
- [Release notes](https://github.com/actions/upload-pages-artifact/releases)
- [Commits](actions/upload-pages-artifact@v1...v2)

---
updated-dependencies:
- dependency-name: actions/upload-pages-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 2 to 3.
- [Release notes](https://github.com/actions/deploy-pages/releases)
- [Commits](actions/deploy-pages@v2...v3)

---
updated-dependencies:
- dependency-name: actions/deploy-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 3 to 4.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v3...v4)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 3 to 4.
- [Release notes](https://github.com/actions/deploy-pages/releases)
- [Commits](actions/deploy-pages@v3...v4)

---
updated-dependencies:
- dependency-name: actions/deploy-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 2 to 3.
- [Release notes](https://github.com/actions/upload-pages-artifact/releases)
- [Commits](actions/upload-pages-artifact@v2...v3)

---
updated-dependencies:
- dependency-name: actions/upload-pages-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
@tclose tclose merged commit 7d3222a into main Mar 25, 2024
14 checks passed
@tclose tclose deleted the latest-auto-conv branch March 25, 2024 06:40
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3 participants